BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4440.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313844|ref|YP_003777936.1| sortase/acetyltransferase [Herb...   284   3e-78
gi|300312416|ref|YP_003776508.1| phosphinothricin N-acetyltransf...   115   2e-27

>gi|300313844|ref|YP_003777936.1| sortase/acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  284 bits (726), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 136/173 (78%), Positives = 152/173 (87%)

Query: 1   MQIRDAIPADIPAITQIFNDAVIHTTAIWSDTLVNDQNRLDWLAARRQLGYPVLVAVEDE 60
           MQIRDA  ADI  IT I+NDAV +TTAIW++TLV+D+NR DWL ARRQ GYPVLVAV D 
Sbjct: 1   MQIRDAELADIAGITPIYNDAVANTTAIWNETLVDDRNREDWLTARRQSGYPVLVAVADG 60

Query: 61  KVLGYASFGDWRPFDGFRHSVEHSVYVHQDHRGQGLGEALMQALIPRARAVGKHVMVAAI 120
           KVLGYASFGDWR FDG+RH+VEHSVYVH+DHRG+GLG ALM+ALI RARA+GKHVMVA I
Sbjct: 61  KVLGYASFGDWRAFDGYRHTVEHSVYVHKDHRGEGLGRALMEALIARARALGKHVMVAGI 120

Query: 121 DASNVGSIALHKKLGFAQVGHMPQVGTKFGKWLDLAFLQLTLDQRTDPDRVGS 173
           DASN GSI LHKKLGF QVG++PQVGTKFGKWLDLAFLQL LD RT+PDR+G 
Sbjct: 121 DASNSGSINLHKKLGFEQVGYLPQVGTKFGKWLDLAFLQLMLDGRTEPDRIGG 173


>gi|300312416|ref|YP_003776508.1| phosphinothricin
           N-acetyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 167

 Score =  115 bits (288), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 1/162 (0%)

Query: 3   IRDAIPADIPAITQIFNDAVIHTTAIWSDTLVNDQNRLDWLAARRQLGYPVLVAVEDEKV 62
           IR A  AD PA+  I+N  V  TTAI  +T    +  +    A  Q  +P LV  E+ +V
Sbjct: 5   IRPATAADAPALCGIYNHYVA-TTAISFETEPVSEESMVARIAEVQAKFPWLVYEEEGQV 63

Query: 63  LGYASFGDWRPFDGFRHSVEHSVYVHQDHRGQGLGEALMQALIPRARAVGKHVMVAAIDA 122
           LGYA    W+P   +R SVE SVY+  D  G+G+G+ L + L    + +G H+++  I  
Sbjct: 64  LGYAYATQWKPRAAYRQSVESSVYLRHDAGGRGIGKRLYRQLFAELKPLGIHLVIGGIAQ 123

Query: 123 SNVGSIALHKKLGFAQVGHMPQVGTKFGKWLDLAFLQLTLDQ 164
            N  S+ALH+ LGF + G   +VG K G+W+D+ + QL L +
Sbjct: 124 PNAASVALHESLGFVKCGVFNEVGYKMGRWIDMGYWQLKLQE 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 546,544
Number of extensions: 21868
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)