BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4439.p
         (559 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558...   559   e-160
gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918...   128   1e-30

>gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  559 bits (1440), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 349/583 (59%), Positives = 403/583 (69%), Gaps = 62/583 (10%)

Query: 1   MTTRNKTSAIIVSASLLGAVLALSACQKQDTPPPTAAAAPAAPTTPPYTPPTA---QQLS 57
           MTTRN++SAIIVSASLLGAVLALSACQKQD PPPTAA AP APT     P T    +QLS
Sbjct: 1   MTTRNRSSAIIVSASLLGAVLALSACQKQDAPPPTAAGAPTAPTAAATPPYTPPTAEQLS 60

Query: 58  QMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNSALKGDILQAAEEKQPWDVSVKS 117
           QMVAPIALFPDKLVAQVLAGATYPDQ+VAANQWLGQNSALKGDILQAAE+KQPWDVSVKS
Sbjct: 61  QMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDVSVKS 120

Query: 118 LTMFPAVLSQMASNEDWTRSLGDAFVNDPNDVMNAIQELRLRAQQAGNLKSSSQLRVSST 177
           LTMFPAVLSQMA+N DWTR+LGDAFVNDPNDVMNAIQ LRL+AQQAG+LKSS QLRVS+T
Sbjct: 121 LTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLRVSTT 180

Query: 178 VRSSESVRVENAPEPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPTYNPAVVYGPPVPVY 237
            RS+ +VR E    P+ VYAGAPVI PPPQTIVIESSQPDTVYVP Y+PAVVYG PVPVY
Sbjct: 181 ERSTSTVRYET---PQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGAPVPVY 237

Query: 238 PGYVYRPPSPVANEVVVGALSFGVGVFVGEAISHHSDWGWGWHDWGMHWGGSGGGEWQRP 297
           PGYVYRPPS VA+EVVVGALSFGVGVFVGEAISHHSD  WGWHDWGMHWGG    +  +P
Sbjct: 238 PGYVYRPPSHVADEVVVGALSFGVGVFVGEAISHHSD--WGWHDWGMHWGGP--VQQDQP 293

Query: 298 AVVYKNATYVSHSTTIVNRVTNNNVTINNTRVVNNNVNNVSNVNNVNNVNNVNNVNNVRN 357
           AVVYKN +YVSHSTT++NRVTNN +  NN R VNN  N  +  N  N  N  N VN  R 
Sbjct: 294 AVVYKNTSYVSHSTTVINRVTNNVIVNNNNRTVNNISNVNNVSNVNNVNNTRNVVNENR- 352

Query: 358 VEQRNITNYNQTRIDNRHETAAPAATAMTMPHFTASDTRVGAMPERREQMGQQKMELANV 417
           V++R   N     +D R E    A  AM+MPHFTASD R+GA P        Q+M   + 
Sbjct: 353 VDRRVTVN----NVDQRREAVQAAPAAMSMPHFTASDARMGATPHAP---APQQMAALHE 405

Query: 418 HAQPATPSTAQREAAHANDAHQRQEMEQQAQRERLQAQQNEQQQARLQAEQRKSQAMKQQ 477
           H  PA P        HA+  H  + M ++                +  AE+RK   M+Q 
Sbjct: 406 HVAPAAPE-------HASAQHDARVMAEE----------------KKMAEERKMPPMQQM 442

Query: 478 EQENARLQAQQAERRQ---AQVERPEPRPQNKPEHEQKAAMEKHEAAAHEHE-------- 526
           ++E A+    + E ++   A +  P    Q  P+ E+K +M  H A+  +HE        
Sbjct: 443 QKEAAKPAMTRMENKEAPAAHMTPPVAHAQPAPQREEKMSMPTHAASMQQHEAQAHAPAP 502

Query: 527 ----------HAADNHAAQKHEAAKHEEEERGKEKREAEKHEG 559
                     H  + H AQ+H+A KHEE++   +K EAEKHEG
Sbjct: 503 HPPAQHAAEAHEVEKHEAQQHQAEKHEEQKHAADKHEAEKHEG 545


>gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 110/224 (49%), Gaps = 40/224 (17%)

Query: 8   SAIIVSASLLGAVLALSACQKQDTPPPTAAAAPAAPTTPPYTPPTAQQLSQMVAPIALFP 67
           S +  +A L+ ++++    Q Q   PP  A              T QQL QM+AP+AL+P
Sbjct: 4   STLAWAACLVFSLVSGMPAQAQSAYPPAPAVY------------TQQQLDQMLAPVALYP 51

Query: 68  DKLVAQVLAGATYPDQIVAANQWLGQNSALKGDILQAAEEKQPWDVSVKSLTMFPAVLSQ 127
           D L+AQVL  +TYP ++V A +++     L+GD L  A    PWD SVK+L  FP+VL+ 
Sbjct: 52  DSLLAQVLMASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAM 111

Query: 128 MASNEDWTRSLGDAFVNDPNDVMNAIQELRLRAQQAGNLKSSSQLRVSSTVRSSESVRVE 187
           M    DW + LG AF+     VM+ +Q LR RA+ AG L+SS Q RV       E V V 
Sbjct: 112 MNDRLDWMQQLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQDDFIEIVPVN 171

Query: 188 NAPEPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPTYNPAVVYG 231
                                       P  VYVP YNP VVYG
Sbjct: 172 ----------------------------PQVVYVPYYNPVVVYG 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.123    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 735,173
Number of extensions: 19173
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 559
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 469
Effective length of database: 1,193,720
Effective search space: 559854680
Effective search space used: 559854680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 133 (55.8 bits)