BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4438.p
         (768 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309895|ref|YP_003773987.1| methionine synthase II protein ...    98   2e-21

>gi|300309895|ref|YP_003773987.1| methionine synthase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 142/322 (44%), Gaps = 33/322 (10%)

Query: 434 PTTTIGSFPQTAEIRQARSHYKAGQLDEAAYRTVMRAEIERSVREQEALGLDVLVHGEAE 493
           PT+T GS P+ A + +    +   +L  A      R  +  S++EQ+  G+D++  GE  
Sbjct: 6   PTSTAGSLPKPAWLAEPEKLWSPWKLQGAELEDAKRDALRLSLQEQQHAGIDIVSDGEQT 65

Query: 494 RNDMVEYFGEQLQGYAFSQFGWVQSYGSRCVKPPILFGDISRPQAMTVEWITHAQSLTSK 553
           R   V  F E L G  F++   V+         P + G +SRP+ + V+     +S T +
Sbjct: 66  RQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSRPKPVFVDDARFLRSQTDQ 125

Query: 554 PMKGMLTGPVTLLNWSFVRDDQPRADSCRQLALAIRQEVLDLEAAGVRVIQIDEAALREG 613
           P+K  L GP+T+++  +    + R     + A  + QE  +LEAAGV +IQ DE A    
Sbjct: 126 PIKWALPGPMTMIDTLYDSHYKSREKLAWEFATLLNQEARELEAAGVDIIQFDEPAF--- 182

Query: 614 LPLRRAQWQHYLNWAVQAFRITANGVADTTQIHTHMCYS------------------EFN 655
                  +    +W V        G+   T +  H+CY                   ++ 
Sbjct: 183 ----NVFFDEVNDWGVATLERAIEGLKCETAV--HICYGYGIKANTDWKKTLGSEWRQYE 236

Query: 656 DIIASIADMDADVITIE--TSRSDMELLDAFDHFNYPNEIGPGVYDIHSPNIPTQEHMVQ 713
           +    +     D++++E   +R  M+L++         ++  G  D+ +  + + E +  
Sbjct: 237 ETFPRLQASSIDIVSLECHNARVPMDLIELIRG----KKVMVGAIDVANHGVESAEEVAA 292

Query: 714 LMQKATERIDARRLWVNPDCGL 735
            +++A + ++A +L+   +CG+
Sbjct: 293 TLRRALQFVEADKLYPCTNCGM 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,396,232
Number of extensions: 99151
Number of successful extensions: 303
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 675
Effective length of database: 1,179,515
Effective search space: 796172625
Effective search space used: 796172625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)