BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4435.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 461 e-131 gi|300310849|ref|YP_003774941.1| two component transcription reg... 215 2e-57 gi|300313665|ref|YP_003777757.1| two component transcription reg... 191 7e-50 gi|300311515|ref|YP_003775607.1| two component response regulato... 155 4e-39 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 151 5e-38 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 461 bits (1185), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/237 (96%), Positives = 230/237 (97%) Query: 1 MTRKILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPD 60 MTRKILIVDDDQKTRTLLKAYLEKNQYEV LAHDGA FL+EFQR+ADELSLVILDVMLPD Sbjct: 1 MTRKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADELSLVILDVMLPD 60 Query: 61 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR Sbjct: 61 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 Query: 121 RIGIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNV 180 RIGIDSSAAPRYYRFAGFSLDTVERTL D G IVPLTGMDYQLLKYFVEHPGDVLDRNV Sbjct: 121 RIGIDSSAAPRYYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRNV 180 Query: 181 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSVAAA 237 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVS AAA Sbjct: 181 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAAAA 237 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 215 bits (548), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 10/239 (4%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADE--LSLVILDVMLPDTD 62 IL+VDDD+ RTLL YL+ N A +G SE +RV +E + L++LD+ LP D Sbjct: 10 ILVVDDDRDIRTLLAEYLDSNGLRTLTATNG----SEMRRVLEESRVDLIVLDLTLPGED 65 Query: 63 GFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 G LC+ +R S+VPVIMLTA + DR++GLE+GADDY+AKP+ PREL ARI+++ RR Sbjct: 66 GLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 125 Query: 123 GI--DSSAAPRY--YRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDR 178 + A P RFAG++LD R L +R G +V L+G +++LLK F++HP VL+R Sbjct: 126 QALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNR 185 Query: 179 NVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSVAAA 237 + L E T+GR++ P DRS+D+QIS+LR +L D R P +IKTVR GYV + V+ A Sbjct: 186 DQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTTEGA 244 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 191 bits (484), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 106/238 (44%), Positives = 142/238 (59%), Gaps = 18/238 (7%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRV--ADELSLVILDVMLPDTD 62 +LIVDDD R LL YLE Y A G E R+ ++ + ++ILD+M+P D Sbjct: 7 VLIVDDDPDIRHLLADYLEAASYRPFTAAGG----QEMWRILGSERIDIIILDLMMPGED 62 Query: 63 GFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 G LC+ +R+K N P++MLTA DR+VGLE+GADDY+ KP+ PRELLARIK I RR Sbjct: 63 GLELCRELRKKRNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRR- 121 Query: 123 GIDSSAAPR--------YYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGD 174 + + P + FAG+ LDT R +G + L G DYQ+L+ +EHP Sbjct: 122 ---ARSFPEKLEADRVSHIHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRR 178 Query: 175 VLDRNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADV 232 L R+ L G++A P DRS+DV IS+LR +L D R+P LI+TVR GY+ ADV Sbjct: 179 ALSRDFLLNTVYGKEAMPFDRSIDVCISRLRQQLGDNPREPALIRTVRNTGYMLMADV 236 >gi|300311515|ref|YP_003775607.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 136/226 (60%), Gaps = 3/226 (1%) Query: 4 KILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDG 63 K+L++DDD + +LK YLE+ ++EV++A+DG A +E + + ++ +LDVM+P +G Sbjct: 3 KVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEA--LTGQYAIAVLDVMMPRLNG 60 Query: 64 FALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIG 123 + +R KS++PV+MLTA D+TDR++GLELGADDY+ KP SPRE+ ARI+AI RR Sbjct: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 Query: 124 IDSSAAPRYYRFAGFSLDTV-ERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVLC 182 +++ Y A +L E+ G+ + LT ++ LL+ + G + + L Sbjct: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 Query: 183 EETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228 E+ GR DR++DV +S +R ++ G I+TV GY F Sbjct: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQF 226 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 151 bits (381), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 136/231 (58%), Gaps = 9/231 (3%) Query: 4 KILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDG 63 K+L+VDDD + R LL+ YL + + V A + A + R + L++LD+MLP DG Sbjct: 19 KVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIR--ERYDLLVLDLMLPGEDG 76 Query: 64 FALCKAVRRKSN-VPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 A+C+ +R + P+IMLTA ++ DR++GLE+GADDY+ KP++PREL+ARI A+ RR Sbjct: 77 LAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRK 136 Query: 123 GIDS-----SAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLD 177 G D S P + F F LD RTL + G + LT ++ +LK F + L Sbjct: 137 GPDELPGAPSETPETFEFGDFILDLGTRTLK-KNGDTISLTTGEFSVLKVFARNARQPLS 195 Query: 178 RNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228 R L E RGR+ DRSLDVQIS+LR + P I+TV G GYVF Sbjct: 196 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 731,253 Number of extensions: 30581 Number of successful extensions: 257 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 41 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)