BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4432.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313827|ref|YP_003777919.1| hypothetical protein Hsero_4545...   238   2e-64

>gi|300313827|ref|YP_003777919.1| hypothetical protein Hsero_4545
           [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  238 bits (606), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 130/144 (90%), Gaps = 2/144 (1%)

Query: 5   SPDPHSPLPGSRLAPLRTRWLWLLLAYVSLGIGIVALFIPGIPTTEFVLLSAWAASRGSP 64
           +P+  +    S LAP RTRWLWLLLAY SLG+GIVA+FIPGIPTTEFVLLSAWAA +GSP
Sbjct: 3   APEQRASSAPSTLAPARTRWLWLLLAYASLGVGIVAIFIPGIPTTEFVLLSAWAAGKGSP 62

Query: 65  RLQRWLEQHRLFGPMIHNWRHGQVVARRAKISASLMMSLCLVIMLFTVKRHWVIVLATLG 124
           RLQRWLEQHRLFGPMIHNWRHG+VVARRAKISASLMMSLCLVIMLFTVKRHWVIVLATLG
Sbjct: 63  RLQRWLEQHRLFGPMIHNWRHGRVVARRAKISASLMMSLCLVIMLFTVKRHWVIVLATLG 122

Query: 125 MAVGAAWMWSRPERIEADNALPGS 148
           MA+GAAWMWSRPER  A++A PG 
Sbjct: 123 MALGAAWMWSRPER--AEDAEPGE 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 490,132
Number of extensions: 18085
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)