BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4431.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313826|ref|YP_003777918.1| heme oxygenase [Herbaspirillum ...   278   2e-76

>gi|300313826|ref|YP_003777918.1| heme oxygenase [Herbaspirillum
           seropedicae SmR1]
          Length = 196

 Score =  278 bits (711), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/196 (78%), Positives = 168/196 (85%)

Query: 1   MNIVSPQAAPLSARLKTETAALHEQMHALMESAQPFSSRAHYARFVAAQYHFQRDVQHLF 60
           M  V+  A  LSARLK +TAALHEQMHALME AQPF+ RA YA+FVAAQYHFQRDV+HLF
Sbjct: 1   MKPVATPAPSLSARLKADTAALHEQMHALMEQAQPFADRARYAQFVAAQYHFQRDVEHLF 60

Query: 61  DDPALQAAVPDLQVRGREAAALADLADLDAEPGALAIATATVQLPEALGWLYVSEGSTLG 120
           DDPALQAAVPDLQVRGREA ALADLADL A PG + IATATV++PEALGWLYVSEGSTLG
Sbjct: 61  DDPALQAAVPDLQVRGREADALADLADLGAVPGQIDIATATVRMPEALGWLYVSEGSTLG 120

Query: 121 AAFLLKEVKAKLGLREDFGARNLAAYPEGRALVWRRFVGFLDAPGLSAQQQSAVIAGAAA 180
           AAFLLK+V+ +LGL E FGARNLAAY EGRA+VWRRFVGFLD  G S Q Q AV+AGA A
Sbjct: 121 AAFLLKQVQQRLGLDEQFGARNLAAYAEGRAVVWRRFVGFLDQAGDSPQVQEAVLAGARA 180

Query: 181 AFARFGWLLRQHFALA 196
           AF RFG LLR+HFALA
Sbjct: 181 AFERFGALLRRHFALA 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 554,088
Number of extensions: 19189
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)