BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4430.p (598 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 1079 0.0 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 530 e-151 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 477 e-135 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 454 e-128 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 333 2e-92 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/598 (92%), Positives = 580/598 (96%) Query: 1 MLKSIKARILFYTITLLIASLAVVGTLSFIIIKSDNDRAIERNAQAVASGYGSTINEWVA 60 M SIKARILFYTITLLIASLAVVGT+SF IIK DNDRAIERNA++VASG+GSTINEWVA Sbjct: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 Query: 61 ARSAMTVAAAEGVLAADPVFVIKMLQKSGGFYVTTLGKEDKAAFTSAAEGLPAGYDPTAR 120 AR+AMTVAAA+GVL ADPVFVIK LQKSGGFYVTTLGKEDK AFTSAAEGLPAGYDPTAR Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVLQNGQRVGVVAAAMFLDGVSDVVRSI 180 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPV+QNGQR GVVAAAMFLDGVSDVVRSI Sbjct: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 Query: 181 HPTPASFAFLIDRDGLMLAHPDGQWVNKPAKEWNAELTPERVQSLGSEDKVSAMMLDGAA 240 HPTPASFAFL+DRDGLMLAHPDGQWVNKPAKEWNAELTPER+ +L ++DK S +ML+GAA Sbjct: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 Query: 241 KLVKGLPIKGTEWTLVLAMDKADVTAGMRNATRSALIALVLVALVAAGIMSLITTAVFLR 300 KLVKG+PIKGTEWTL+LAMDKADVTAG+RNA+RSALIALVLVALVAAGIMSLITTAVF R Sbjct: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR 300 Query: 301 LSRVRRAMDNLSSGNGDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKI 360 LSRVRRAMDNLSSGNGDLTLRL EDG DEVTQISRSFN FVNQITGILQDVRRSSDTVKI Sbjct: 301 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI 360 Query: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAK 420 SSTEIATGNQDLSARTEQQAGALEETASAME+LTSTVQQNSENARRANELAGNAS+IAA+ Sbjct: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ 420 Query: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 Query: 481 ASEVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEI 540 ASEVRSLAQRSAQAAKEIKVLID+SVSKVADGGVLV QAGQTMEQIV+SIRDVSVIVSEI Sbjct: 481 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI 540 Query: 541 AHASGEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 AHAS EQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAA+SLQDEAHRLSVLVGGFKM Sbjct: 541 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 530 bits (1364), Expect = e-151, Method: Compositional matrix adjust. Identities = 306/599 (51%), Positives = 414/599 (69%), Gaps = 7/599 (1%) Query: 1 MLKSIKARILFYTITLLIASLAVVGTLSFIIIKSDNDRAIERNAQAVASGYGSTINEWVA 60 ML S++AR++F + ++ ++ ++ + ++SD AI Q + + + I+EWV Sbjct: 1 MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60 Query: 61 ARSAMTVAAAEGVLAADPVFVIKMLQKSGGFYVTTLGKEDKAAFTSAAEGLPAGYDPTAR 120 ++ +T A + + +D + ++ Q++G F +G DK A +PAGYDPTAR Sbjct: 61 SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRML--ALHPMPAGYDPTAR 118 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVLQNGQRVGVVAAAMFLDGVSDVVRSI 180 PWYKQAV AGKPVLT PY D T K +V+F PV V+ + + LD V V I Sbjct: 119 PWYKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGI 178 Query: 181 HPTPASFAFLIDRDGLMLAHPDGQWVNKPAKEWNAELTPERVQSLGSEDKVSAMMLDGAA 240 PTP+SFAF++ +DG+++ HP+ + KP + L+ QSL + + + G Sbjct: 179 KPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLS---AQSLAGMKQGGSATIGGIR 235 Query: 241 KLVKGLPIKGTEWTLVLAMDKADVTAGMRNATRSALIALVLVALVAAGIM-SLITTAVFL 299 L+ PI T+W+LV+A+D + T + A + L ++A+VA+ I+ S T + Sbjct: 236 YLLFTQPIANTDWSLVVALDYREATHAI-GALMTLSTVLAVLAIVASAILLSYTITRLLR 294 Query: 300 RLSRVRRAMDNLSSGNGDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVK 359 RL VR AM+ ++SG+GDLT RL G+DE+ QISR+FN F ++I+ L D+RR+S++VK Sbjct: 295 RLGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVK 354 Query: 360 ISSTEIATGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAA 419 +SS+EIA+GN DLSARTEQQAG+LEETASAME+LTSTV+QN++NAR+AN+LA +AS +A Sbjct: 355 VSSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAV 414 Query: 420 KGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 479 GG+VVG VV+TM +IN SSR+I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 415 HGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 474 Query: 480 VASEVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSE 539 VASEVRSLAQRSA AAKEIK LID SV KV G LVAQAG TME++VSS+R V+ IV E Sbjct: 475 VASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGE 534 Query: 540 IAHASGEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 I+ AS EQ+ GI EV A+ +DE TQQNAALVEQAAAAAKSLQ++A L+ +V GFK+ Sbjct: 535 ISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKL 593 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust. Identities = 271/596 (45%), Positives = 391/596 (65%), Gaps = 1/596 (0%) Query: 4 SIKARILFYTITLLIASLAVVGTLSFIIIKSDNDRAIERNAQAVASGYGSTINEWVAARS 63 S++ R++ +++ ++ + +F+ +S ++ +A + I EW ++ Sbjct: 24 SLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSKK 83 Query: 64 AMTVAAAEGVLAADPVFVIKMLQKSGGFYVTTLGKEDKAAFTSAAEGLPAGYDPTARPWY 123 + + E AADP+ +K Q +GGF + LG DK A S YDPT RPWY Sbjct: 84 LVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPWY 143 Query: 124 KQAVAAGKPVLTKPYTDVATKKPMVSFTAPVLQNGQRVGVVAAAMFLDGVSDVVRSIHPT 183 +QA +PVLT PYT +T K +V+F V ++GQ V AA + LD V V +I PT Sbjct: 144 QQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPT 203 Query: 184 PASFAFLIDRDGLMLAHPDGQWVNKPAKEWNAELTPERVQSLGSEDKVSAMMLDGAAKLV 243 P S+AFL D G ++AHP+ + KP + +A +TP+ + + LDG +++ Sbjct: 204 PNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQML 263 Query: 244 KGLPIKGTEWTLVLAMDKADVTAGMRNATRSALIALVLVALVAAGIMSLITTAVFLRLSR 303 + GT+W LV+A+D+AD A + S+ + VLV ++AA ++ + + + RL+ Sbjct: 264 FVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLTV 323 Query: 304 VRRAMDNLSSGNGDLTLRLAEDGQ-DEVTQISRSFNKFVNQITGILQDVRRSSDTVKISS 362 V+ A++ ++ G+GDLT RL G+ DE+ +I +FN+FV++I ++ D+R +S T+ +S Sbjct: 324 VQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAAS 383 Query: 363 TEIATGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAKGG 422 +IA+GN DLS RTE QA +LE+TA+AMEQLTS+V+ N++NA +AN+L+ +ASQIA +GG Sbjct: 384 RDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGG 443 Query: 423 EVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 482 +V VV TM INASS++I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS Sbjct: 444 TMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 503 Query: 483 EVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAH 542 EVRSLAQRSA AAKEIKVLI SV +V G VAQAG T+ +V S++ VS +V+EI Sbjct: 504 EVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEITA 563 Query: 543 ASGEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 AS EQ+ GI + N A+ H+D+ TQQNAALVEQAAA A+SLQ++A RL+ +V F++ Sbjct: 564 ASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust. Identities = 253/598 (42%), Positives = 388/598 (64%), Gaps = 2/598 (0%) Query: 1 MLKSIKARILFYTITLLIASLAVVGTLSFIIIKSDNDRAIERNAQAVASGYGSTINEWVA 60 ML S++AR++ I L+I+S+ + +++I + + A + + + + I +W+A Sbjct: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 Query: 61 ARSAMTVAAAEGVLAADPVFVIKMLQKSGGFYVTTLGKEDKAAFTSAAEGLPAGYDPTAR 120 +S M + + L +DP ++K +Q +GGFY +G DK A + +PA YDPT R Sbjct: 61 GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVLQNGQRVGVVAAAMFLDGVSDVVRSI 180 PWYK + AGKPV PY + +V+ PV+++G VV + LD V + ++SI Sbjct: 121 PWYKGVLQAGKPV-ALPYVST-SGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSI 178 Query: 181 HPTPASFAFLIDRDGLMLAHPDGQWVNKPAKEWNAELTPERVQSLGSEDKVSAMMLDGAA 240 HPTP+SF L+++ G ++AHPD Q K A E E + V + G +++DG Sbjct: 179 HPTPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGRE 238 Query: 241 KLVKGLPIKGTEWTLVLAMDKADVTAGMRNATRSALIALVLVALVAAGIMSLITTAVFLR 300 KLV+ + GT+W +V+A+D+ + +AG+R S+L++LV V + A+ I + +T F R Sbjct: 239 KLVRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRR 298 Query: 301 LSRVRRAMDNLSSGNGDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKI 360 L ++ AM + SG+GDLT RL + G+DEV I++SFN FV ++ +++D+R + +TV++ Sbjct: 299 LGQISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRV 358 Query: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAK 420 +S EIA N DLS RTE A +LE+TA++M ++++TV +++ A A++ + A+ IA++ Sbjct: 359 ASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQ 418 Query: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 GG+VV + V+TM I S QI DII+VIDGIAFQTNILALNAAVE+ARAGEQGRGFAVV Sbjct: 419 GGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVV 478 Query: 481 ASEVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEI 540 A EVR+LAQRSA AA+E+K L++ ++S+VA G V QAG TM IV+ DV +++I Sbjct: 479 AHEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADI 538 Query: 541 AHASGEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 A + EQ GIQEVN A+ +D QQNAALVE++AAA+ +LQ +A+ L+ + F++ Sbjct: 539 ARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 333 bits (855), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 251/323 (77%), Gaps = 10/323 (3%) Query: 276 LIALVLVALVAAGIMSLITTAVFLRLSRVRRAMDNLSSGNGDLTLRLAEDGQDEVTQISR 335 L A++L L+A I+ +T AV R +N+++G DLT R+ +DE Q+ + Sbjct: 204 LAAIILGYLMARSIVKPLTEAV--------RVAENVAAG--DLTTRIEPHSRDETGQLMQ 253 Query: 336 SFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEQLTS 395 + K + + I+ VRR ++++ +S EIA+GN DLSARTEQQAG+LEETASAME++TS Sbjct: 254 ALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTS 313 Query: 396 TVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQ 455 TV+QN++NAR+AN++A +AS+IA +GG++VG VV TM+ IN SSR+I DII VIDGIAFQ Sbjct: 314 TVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQ 373 Query: 456 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVL 515 TNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI SV KV G L Sbjct: 374 TNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSAL 433 Query: 516 VAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVNLAITHIDEGTQQNAALVEQA 575 VAQAG TMEQ+VSS+R V+ IV+EI+ AS EQ+ GI+E+N A+T +DEGTQQNAALVEQA Sbjct: 434 VAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQA 493 Query: 576 AAAAKSLQDEAHRLSVLVGGFKM 598 AAAAKS+Q++A RL+ + FK+ Sbjct: 494 AAAAKSMQEQAVRLTQSISIFKL 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,459,939 Number of extensions: 54734 Number of successful extensions: 549 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 340 Number of HSP's successfully gapped: 71 Length of query: 598 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 507 Effective length of database: 1,188,985 Effective search space: 602815395 Effective search space used: 602815395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)