BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4425.p (587 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 789 0.0 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 672 0.0 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 491 e-140 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 490 e-139 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 476 e-135 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/599 (74%), Positives = 507/599 (84%), Gaps = 14/599 (2%) Query: 1 MNVKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSD 60 M +K++KISVRLAVCFA+LI VMCLITG MKSLS +S S++ IV+DRY KI+L E+ D Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 NVNSAARNLRNALLARNVEESNKYLSAGLANSSRTVEALGKLEKLINTPKGKEMFAALIA 120 NVN AARNLRNALL RN+EE+ +YL ANS++T EALGK+EK+++T +G+E+F ++ Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 VRNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASVAQ 180 R+AY+ PRDKLRELIK+QKK+EA++ LF +VIP QD+YF VLD+FV +QKSLM+ SV + Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 GKEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQT 240 G++ + SA+ +ML LS +AI LC +AAWLVTRSITRPLNEAV VASAVA GDLTVQIG T Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEE 300 SKDETG LLA+LK+MN+SLHRIVSEVR G+DTINTAS+EIATGNLDLSSRTEEQAGALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDI 360 TASAMEELTSTVKQNADNARQAN LAATASEVAVQGGSVVGQVVQTMGEIN+AS+KIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 421 VTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 V+RVDNGSRLVEQAG+TM EVVASV+RVTDVVAEISAASNEQSDGIEQINHAITQMDQVT Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 481 QQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPT-------- 532 QQNAALVEEAAAAAQSLQEQS+RL+ATVSVFKLSS+D A A RKP P Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSHDTPHAAAPRKPAPAQAASRPAAAA 540 Query: 533 ---PAPTPAPHKPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPV-ADDGDWEQF 587 AP+ +A P PKALP A+ SAKAGSK + ADDGDWEQF Sbjct: 541 TVRTAPSKPAAVLASSASPASPASTTPKALP--SKPAAPASAKAGSKAMAADDGDWEQF 597 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/592 (64%), Positives = 461/592 (77%), Gaps = 22/592 (3%) Query: 1 MNVKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSD 60 M + ++KISVRL CFA LI VMC+I G +K+L VS +T +IV+DRYVK++L +++D Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NVNSAARNLRNALLARNVEESNKYLSAGLANSSRTVEALGKLEKLINTPKGKEMFAALIA 120 VN+ AR+LRNA++ARN EE KYL +S+ E L ++EK NTP+G E+ AAL Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 VRNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASVAQ 180 R YS R K+ +LI +QK+DEA +LF + IP QD+YFA + + V +Q SLMD S + Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 GKEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQT 240 SSSA+ +ML LS +A++L AL A L+TRSITRPLNEAV+VA+AVA GDLTVQI T Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEE 300 SKDETG LL +LK+MN++LHRIV+EVR+GTDTINTAS EIATGNLDLSSRTE+QAGALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDI 360 TASAMEELTSTV+QNADNARQAN LA TAS+VA+QGGSVVG+VVQTMG+IN+AS+KIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK+LID S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 V RV++GSRLV QAG+TM EVVASVKRVTDVVAEI+AAS EQSDGIEQIN AI QMD+VT Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTPAPTP--- 537 QQNAALVE+AAAAAQSLQEQS RL+ TV +F+L ++ A + P P AP Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQ--------PSPLSAPVQRSV 533 Query: 538 --APHKPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGDWEQF 587 AP +PV+ A KPV AP A S +A+ ++ DG WEQF Sbjct: 534 QVAPARPVL-ARKPVTRTSAP--------AKSIPAAQPVAQAALADGQWEQF 576 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 491 bits (1265), Expect = e-140, Method: Compositional matrix adjust. Identities = 296/570 (51%), Positives = 381/570 (66%), Gaps = 28/570 (4%) Query: 1 MNVKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSD 60 M N+ I+ RLA+ F+ILI V+ I + L+ ++ + +V+DRY KI+++N +S Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 NVNSAARNLRNALLARNVEESNKYLSAGLANSSRTVEALG--------KLEKLINTPKGK 112 V+ A +LRN LL + A +A +T+E+L +L +L+ P+ K Sbjct: 61 KVDDVAISLRNQLLMTD--------PAQIAAEQKTIESLSAENTKLYDELTRLVANPEAK 112 Query: 113 EMFAALIAVRNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKS 172 + R +Y+ R ++ +L KD AI + E++P Q YF+ LD+ D Q+ Sbjct: 113 AKLDKVTETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQK 172 Query: 173 LMDASVAQGKEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGD 232 LMD SV Q + + +M+ +A A AW ++RSITRPL+ AV+VA VA GD Sbjct: 173 LMDQSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGD 232 Query: 233 LTVQIGQTSKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTE 292 LT I S DETG LL +L MN+ L IV EVR GTD++ TAS++IATGNLDLSSRTE Sbjct: 233 LTAVIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTE 292 Query: 293 EQAGALEETASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINE 352 EQA ALEETAS++EELTS+VKQNAD+ R++++LAA AS+VA QGG V QVVQTMG IN+ Sbjct: 293 EQASALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAIND 352 Query: 353 ASKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKE 412 +S KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKE Sbjct: 353 SSHKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKE 412 Query: 413 IKALIDDSVTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHA 472 IK LI+DSV +V +G+ LV QAGSTM VV S+++V+ +V EISAA+ EQSDGIEQ+N A Sbjct: 413 IKELINDSVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQA 472 Query: 473 ITQMDQVTQQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPT 532 I QMD TQQNAALVEEAAAAAQ+LQ+Q+ RL V VF+L ++ G P P Sbjct: 473 IMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRL--DEVG----GSGPAPSAV 526 Query: 533 PAPTPAPHKPVVAAPKPVPTVPAPKALPAK 562 P K AAP+ A K+LPAK Sbjct: 527 APVAPVLRKVSAAAPR------ATKSLPAK 550 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust. Identities = 276/511 (54%), Positives = 371/511 (72%), Gaps = 1/511 (0%) Query: 4 KNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSDNVN 63 KN+K++VRLA FA ++A++ +++ TA ++ ++ + QIV+DRY+K+ ++ D VN Sbjct: 6 KNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVN 65 Query: 64 SAARNLRN-ALLARNVEESNKYLSAGLANSSRTVEALGKLEKLINTPKGKEMFAALIAVR 122 + LR A+ N + K + +T EAL K+ T G++ AL R Sbjct: 66 EQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEAR 125 Query: 123 NAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASVAQGK 182 A+ + L+K A +Y+ +++ Q+ Y A+ F D Q + + A A+ Sbjct: 126 IAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKAV 185 Query: 183 EISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQTSK 242 + A+ + LA S A++ + +L+ RSI +PL EAV+VA VA GDLT +I S+ Sbjct: 186 ADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSR 245 Query: 243 DETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEETA 302 DETG L+ +L+ MN++L IVS VR GT++I TAS EIA+GNLDLS+RTE+QAG+LEETA Sbjct: 246 DETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETA 305 Query: 303 SAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDIIS 362 SAMEE+TSTV+QNADNARQANQ+A +ASE+A+QGG +VG+VV TM EIN++S+KIVDII Sbjct: 306 SAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIG 365 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVT 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIKALI DSV Sbjct: 366 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVG 425 Query: 423 RVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQ 482 +V+ GS LV QAG+TM +VV+SV+ VTD+VAEISAAS EQS GIE+IN A+TQMD+ TQQ Sbjct: 426 KVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQ 485 Query: 483 NAALVEEAAAAAQSLQEQSSRLTATVSVFKL 513 NAALVE+AAAAA+S+QEQ+ RLT ++S+FKL Sbjct: 486 NAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust. Identities = 297/547 (54%), Positives = 384/547 (70%), Gaps = 16/547 (2%) Query: 1 MNV-KNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVS 59 MN+ N+ I RL + FA+++ +I G + L V+ +T +++ + L+ + Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 60 DNVNSAARNLRNALLARNVEES-NKYLSAGLANSSRTV-EALGKLEKLINTPKGKEMFAA 117 N+ + R R +A++ + + Y +A +A SS++ E ++E L++TP+ K +F Sbjct: 61 TNLVAGIR--RTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQK 118 Query: 118 LIAVRNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDAS 177 + +R Y RD++ + +EA+ L + +P Y + K VD+Q+ MD + Sbjct: 119 IGELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDT 178 Query: 178 VAQGKEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQI 237 + I++ + TL+L L + ++L + A +T IT+PL+ AV V+ VAEGDL+ +I Sbjct: 179 AREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEI 238 Query: 238 GQTSKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGA 297 TS+DETG LL SLK MN+SL IVS VRSGTDTI+TASSEIA GNLDLSSRTE+QA + Sbjct: 239 AVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASS 298 Query: 298 LEETASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKI 357 L ETASAMEEL STV+QNADNARQA+QLA +AS VA QGG VV QVV TMG IN +S+KI Sbjct: 299 LAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKI 358 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALI 417 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK LI Sbjct: 359 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELI 418 Query: 418 DDSVTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMD 477 +DSV +VD+GSRLVEQAG+TM EVV+SV+RVTD+VAEISAAS EQ+ GIEQIN AITQMD Sbjct: 419 NDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMD 478 Query: 478 QVTQQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTPAPTP 537 QVTQQNAALVEEAAAAA S+Q Q+ RL VSVF+LS R+P+ + TP Sbjct: 479 QVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSE---------REPLVRREIDVTP 529 Query: 538 APHKPVV 544 + PV+ Sbjct: 530 SS--PVL 534 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.123 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,075,734 Number of extensions: 32301 Number of successful extensions: 565 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 278 Number of HSP's successfully gapped: 72 Length of query: 587 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 497 Effective length of database: 1,193,720 Effective search space: 593278840 Effective search space used: 593278840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)