BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4424.p (485 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 868 0.0 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 285 4e-78 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 253 3e-68 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 230 2e-61 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 207 1e-54 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/485 (88%), Positives = 456/485 (94%) Query: 1 MGAAARRLGNLRSQLVRWLLIPLTLLVALDAVSVYYNALEVADLAYDRSLLASTRALAER 60 M RRLG+LRSQLVRWLLIPLTLLVA+DAVSVYYNALEVADLAYDRSLLASTRALAER Sbjct: 1 MAGTPRRLGSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAER 60 Query: 61 VSIVDGRVTADVPYVALDSFETDTLGRIYYKVTGLDGELVSGYDDLPPVPANVKRSQAYP 120 VS+VDG VTADVPYVALDSFETD LGRIYYKVTGL+GELVSGYDDLPPVP +VKRS+ YP Sbjct: 61 VSVVDGHVTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYP 120 Query: 121 ALVRFYQADYHQQPIRIAALLQPVYDDSMRGIALIQVGETMEGRNGMTRKILFDTLWRQG 180 ALVRFYQADYH QP+RIAALLQPVYDDS+RGIALIQVGETMEGRNGMTRKILFDTLWRQG Sbjct: 121 ALVRFYQADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQG 180 Query: 181 TLVTVAALLVWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMG 240 TLVTVAALLVWFAVRFVLRP+MQLKGEVESRAPTDLSGFD ALVHKEMRPLV AMNGYMG Sbjct: 181 TLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMG 240 Query: 241 RLQALISGQRRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTD 300 RLQALIS QRRFIADASHQLRTPLTVLKTQSELTLRELRRE +DAAELR+LV+GMARTTD Sbjct: 241 RLQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTD 300 Query: 301 AAVHLANRLLTLARAEHGAAEGGTRPVSLTDAARQVALELSQQAVAREINLGFEEEGDIA 360 AAVHLANRLLTLARAEHGAAEGGT P+SL+DAARQVALELSQQAV+REI L FEEEGD++ Sbjct: 301 AAVHLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS 360 Query: 361 IDANALLLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAE 420 I+ANALLLHELMVNLLDNAIRYTP+GG VTLRVRA S+PGQPT ALLEVED+GPGI AE Sbjct: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAE 420 Query: 421 RARVFEPFYRASATQHVNPGGTGLGLSIVREIAAMHHASVTLDTPALGSGLLVRIAFTGG 480 R +VFEPFYRA ATQHVNPGGTGLGLSIVREIAAMH ASVTLD PA GSGL+VRI F G Sbjct: 421 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVFQGV 480 Query: 481 VEVRV 485 V++RV Sbjct: 481 VQLRV 485 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 285 bits (730), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 168/456 (36%), Positives = 260/456 (57%), Gaps = 19/456 (4%) Query: 7 RLGNLRSQLVRWLLIPLTLLVALDAVSVYYNALEVADLAYDRSLLASTRALAERVSIVDG 66 R ++R+ L+ W++ P+ L + +D+ S+Y N LE + AYDR L+AS ++ + + I +G Sbjct: 7 RRRSVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENG 66 Query: 67 RVTADVPYVALDSFETDTLGRIYYKVTGLDGELVSGYDDLPPVPANVKRSQAYPALVRFY 126 + A +PY AL+ +E D R+ Y++ GLDG+ G DLP + YPAL Y Sbjct: 67 ELKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIY 126 Query: 127 QADYHQQPIRIAALLQPVYDDSMRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVA 186 + Y+ P+R+AAL QPV + RG AL+QV ETME R+ + RKI ++TL RQ L+ V Sbjct: 127 EDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQAALLVVI 186 Query: 187 ALLVWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGRLQALI 246 + + VR L+PV L+ +++ R DLS P + +E++P + A+N M RL+ L+ Sbjct: 187 VSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLL 246 Query: 247 SGQRRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDAAVHLA 306 Q+RF+A+ASHQLRTPL VLKTQ + LR A + Q M+ T + A LA Sbjct: 247 DHQQRFVANASHQLRTPLAVLKTQLQSGLR-------GDAPAPVIWQEMSGTVERATTLA 299 Query: 307 NRLLTLARAEHGAAEGGTRPVSLTDAARQVALELSQQAVAREINLGFEEEGDIAIDANAL 366 N+LL+LA+ E G L AR+ A++LS ++++ E E I + + Sbjct: 300 NQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLSPLIAEKDLDFELEAE-KILVMGHPW 358 Query: 367 LLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAERARVFE 426 ++ EL+ NLL NAIR+TP+ G++ +R+ A + A L + D+G GI VF+ Sbjct: 359 MIGELISNLLHNAIRHTPAQGRLGIRITA-----REDVAELLIWDSGEGIDDQAMENVFK 413 Query: 427 PFYRASATQHVNPGGTGLGLSIVREIAAMHHASVTL 462 F + +V+ G GLGL+I EI A+++L Sbjct: 414 AF-----SSNVSSAG-GLGLTICGEIVDSMQATISL 443 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 253 bits (646), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 161/459 (35%), Positives = 250/459 (54%), Gaps = 21/459 (4%) Query: 21 IPLTLLVALDAVSVYYNALEVADLAYDRSLLASTRALAERVSIVDGRVTADVPYVALDSF 80 IP+ + V L Y NA+ A L DR+LLAS R +A +V DG VP AL+ F Sbjct: 15 IPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELF 74 Query: 81 ETDTLGRIYYKVTGLDGELVSGYDDLPPVPANVKRSQAYPALVRFYQADYHQQPIRIAAL 140 + +YY+V D L++G D P P + YP + ++ +P+R+ + Sbjct: 75 ASPAQDAVYYQVLMDDDTLLAGRPDFPAAP---DFAALYPV---YSTTSFNGKPLRVVSY 128 Query: 141 LQPVYDDSMRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRP 200 ++ ++D+ + + VG+TM+GR M +L RQ L+ +A LV + LRP Sbjct: 129 IRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRP 188 Query: 201 VMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGRLQALISGQRRFIADASHQL 260 ++ LK E+ +R P L+ + +E+RP+V A+N Y+ RL A ++ Q+RF+ADA+HQL Sbjct: 189 LLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQL 248 Query: 261 RTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDAAVHLANRLLTLARAEHGAA 320 RTPL V+ +Q + R+ D A + +++ + + + L N+LL L++AE + Sbjct: 249 RTPLAVIDSQIQFA-----RQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDS 303 Query: 321 EGGTR-PVSLTDAARQVALELSQQAVAREINLGFEEEGDIA-IDANALLLHELMVNLLDN 378 R PV L + V ELS A+ + I+LG E + A ++ N L +++NL+DN Sbjct: 304 SAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDN 363 Query: 379 AIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAERARVFEPFYRASATQHVN 438 A+RYTP GG+VT+ + + ++ V DNGPGI R RVFE FYR +A Sbjct: 364 ALRYTPEGGKVTVGLEKKR-----SQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQ-- 416 Query: 439 PGGTGLGLSIVREIAAMHHASVTLDTPALGSGLLVRIAF 477 G+GLGL+IVREI S+ LD PA GSGL+ ++ Sbjct: 417 -PGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVSL 454 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 230 bits (587), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 221/388 (56%), Gaps = 27/388 (6%) Query: 106 LPPVPANVKRSQAYPALVRFYQADYHQQPIRIAALLQPVYDDSMRG-------IALIQVG 158 +P P + RS V+F H +RIA L + + + +A +QVG Sbjct: 1 MPQPPPDEDRSTV--GTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVG 58 Query: 159 ETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPVMQLKGEVESRAPTDLSG 218 ET+E R + +I+ + Q ++ VA LVWFA+ L P+ +L+ + +R P DLS Sbjct: 59 ETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSP 118 Query: 219 FDPALVHKEMRPLVLAMNGYMGRLQALISGQRRFIADASHQLRTPLTVLKTQSELTLREL 278 D V +E+ PLV ++N + RL I+ Q+RFIADA+HQ++TPL ++ QSEL LR+ Sbjct: 119 IDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQ- 177 Query: 279 RREHLDAAELRELVQGMARTTDAAVHLANRLLTLARAEHGAAE-GGTRPVSLTDAARQVA 337 D ++R ++ +A++++ A L N+LL+LARAE+ ++ GG PV L + AR V Sbjct: 178 ----DDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVV 233 Query: 338 LELSQQAVAREINLGFEE-EGDIAIDANALLLHELMVNLLDNAIRYTP--SGGQVTLRVR 394 + + + I+LGFE+ + I I N ++L EL+ NLLDNA+ YTP G+VT+R R Sbjct: 234 QDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRAR 293 Query: 395 ATSAPGQPTCALLEVEDNGPGIAPAERARVFEPFYRASATQHVNPGGTGLGLSIVREIAA 454 G A+LEVEDNGPGI AERA VFE FYR T G GLGL+IVREIA Sbjct: 294 TDEGGG---LAILEVEDNGPGIPVAERANVFERFYRILGTPSTG-SGLGLGLAIVREIAQ 349 Query: 455 MHHASVTLDTPALGS-----GLLVRIAF 477 H A++ + + + G + R++F Sbjct: 350 QHEAALEITSNPRSTDPKYPGCVFRVSF 377 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 207 bits (527), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 234/469 (49%), Gaps = 24/469 (5%) Query: 10 NLRSQLVRWLLIPLTLLVALDAVSVYYNALEVADLAYDRSLLASTRALAERVSIVDGRVT 69 ++R L++WL+ PL L+ + A Y+ A A A+D++L+ ST L +V R T Sbjct: 7 SIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 66 Query: 70 ADVPYVALDSFETDTLGRIYYKVTGLDGELVSGYDDLPPVPANVKRSQAYPALVRFYQAD 129 A++ A ++ ++ V +G++V G P +PA S + + Y + Sbjct: 67 AELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPA----SDVFDRPIN-YDGE 121 Query: 130 YHQQPIRIAALLQPVYDDSMRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALL 189 +P+RIAA+ V + G+ + V ET+ R+ IL L G L + + Sbjct: 122 MRGEPVRIAAMQVRVKN----GVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFV 177 Query: 190 VWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGRLQALISGQ 249 V AVR LRP+ L+ +E R L D E++PL++AMN M R+ Q Sbjct: 178 VLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQ 237 Query: 250 RRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDAAVHLANRL 309 + F+AD +HQLRTPLT LK Q EL L +H D + + M + + + + +L Sbjct: 238 QNFMADVAHQLRTPLTGLKLQLEL----LHDKHQDQPDTARSLAMMNSSVERMIRQSRQL 293 Query: 310 LTLARAEHGAAEG-GTRPVSLTDAARQVALELSQQAVAREINLGFEEEGDIAIDANALLL 368 L LAR+E G E +SL + ++A + I+LGF+ + + LL Sbjct: 294 LALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLR-PARLRGDRFLL 352 Query: 369 HELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAERARVFEPF 428 +L+ NL+DNA+RY+P G VT+R + +L VED+GPGIAP R +F+ F Sbjct: 353 SDLIDNLIDNAVRYSPPHGTVTVRCLE-----EQDATVLSVEDSGPGIAPEHRELIFDRF 407 Query: 429 YRASATQHVNPGGTGLGLSIVREIAAMHHASVTLDTPALGSGLLVRIAF 477 YRA+ G+GLGL+IVREIA H +++D G G + + F Sbjct: 408 YRAND----KVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRF 452 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,526,525 Number of extensions: 65806 Number of successful extensions: 418 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 37 Length of query: 485 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 396 Effective length of database: 1,198,455 Effective search space: 474588180 Effective search space used: 474588180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)