BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4423.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313818|ref|YP_003777910.1| two component transcription reg... 431 e-122 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 213 1e-56 gi|300309981|ref|YP_003774073.1| two component response regulato... 204 5e-54 gi|300314013|ref|YP_003778105.1| two component response regulato... 184 7e-48 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 174 6e-45 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/223 (94%), Positives = 221/223 (99%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVLKRMRARG+RTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 + EAVTV+CGAL+FDTVSRTFTYGGELLALTPREHAVLEALI+R GHTVPK+KLFQQVF+ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQA 223 L+DNAS+DAIEIYIHRLRKKLEH+GPGRVGITTLRGLGYLLQA Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 213 bits (541), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/222 (49%), Positives = 149/222 (67%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M++LL+ED+ +L+ WL + +++ V+ A +G AD +L ++Y +V+LDL LP++ G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 VL+R+R R + PV+ILTA G + ++V L GADDYL KPFE+ EL AR+K L+RR Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 +A + CG L +D+ +R F GG LAL REH VLE LI+RQG TV K L + VFS Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 L + S DAIE+YI RLRKKL+ G I TLRGLGYLL+ Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSG---AAIMTLRGLGYLLR 219 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 204 bits (519), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 145/222 (65%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILL ED L+ L +++R + +C NG +ADS L TQD+ L+ILDL LP+M GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR SR PVLILTA + RV GL++GADDY+AKPF L ELEARV+AL RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 + G L++D V R G ++L L+ RE +LE L+ R G V K++L + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 + S +AIE+Y+HRLRKK+E G V I T+RGLGY L+ Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGG---VRIATVRGLGYCLE 219 >gi|300314013|ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 184 bits (466), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 150/222 (67%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M ILLVED I++SR L +A+ V +G A S + LV+LDL +P +DGL Sbjct: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 +L+R+R++ TPV++LTARG + DRV GLN GADDYLAKPF+L+EL+AR++ALLRR Sbjct: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 + + CG L FD S F G + L LTPREH +L+ALI + GH V K+KLF+ VF Sbjct: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 ++++ ++AIE+ +HR+RKKL G I TLRGLGYLL+ Sbjct: 181 MEESTQLEAIEVVVHRVRKKLMETG---AEIMTLRGLGYLLR 219 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 174 bits (440), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 4/221 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILLVED +++ + + TVE NGA A S L++ Y L+ILD+ LP+ DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHA-SRRLSESYDLLILDVMLPQQDGF 59 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 +L+++R RG TPVL+LTA + +RV L++GADDYL KPF+ EL+AR++ LLRRS Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 + + C L+ D SR+ T G+ + LT RE +LE + R G KD+L ++F+ Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLL 221 +DDN S +++E Y+ RLRKKL I TLRGLGY L Sbjct: 180 VDDNPSANSVEQYVARLRKKL---AAAAFEIRTLRGLGYQL 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 692,227 Number of extensions: 27394 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 44 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)