BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4422.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport pr...   510   e-146

>gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  510 bits (1313), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/324 (80%), Positives = 287/324 (88%), Gaps = 4/324 (1%)

Query: 1   MQASRWRSVGRPFLVACLLACAVPCALALECIVPAKPGGGMDASCKLLRRVMQEQGQHEA 60
           M ASRWRS+    L ACLLAC  PCALA ECIVPAKPGGGMDASCKLL+RVMQE+G+  +
Sbjct: 1   MLASRWRSL----LAACLLACLGPCALAAECIVPAKPGGGMDASCKLLQRVMQEEGEPRS 56

Query: 61  FKLAYLPGGIGAVAWSSVVSHRRGGPQTLVAFSGGSLLGLAQGKYGRAEVGDVRWVAGIG 120
            KL+YLPGGIGAVAWSSVVS RRGGP TLVAFSGGSLLGLAQGKYG+A   DVRWVAGIG
Sbjct: 57  LKLSYLPGGIGAVAWSSVVSQRRGGPDTLVAFSGGSLLGLAQGKYGKAVPDDVRWVAGIG 116

Query: 121 IDHGMIAVRSDAPWRNLKQLLEAIRKDPTNTTIGLSGTVGSQDWLKMAMLVERAGMNARQ 180
           IDHGMIAVRSDAPWRNLKQLL+AIR+DP+  TIGLSGTVGSQDWLKMA+L +RAG+  RQ
Sbjct: 117 IDHGMIAVRSDAPWRNLKQLLQAIRRDPSAVTIGLSGTVGSQDWLKMALLGQRAGIVPRQ 176

Query: 181 FHFVALEGGGDSFAALQAGHVQVISGDASEAAYFIAEGKVRILAVLSEKRLPGPLQDVPT 240
           F FVALEGGGDSFAALQAGHVQVISGDASEAAYF+AEGKVR+LAVLSE+RLPGPLQ VPT
Sbjct: 177 FRFVALEGGGDSFAALQAGHVQVISGDASEAAYFMAEGKVRVLAVLSEQRLPGPLQAVPT 236

Query: 241 AREQGYDVVWPIIRGFYMSPHTSDADYRRWVQYFEQALADPEFDRQRSIGGLQAFAMTGK 300
           AREQGY+VVWPIIRGFYMSPH  +ADY+RWV+YF++ +ADP F  QRS  GLQ FAMTG 
Sbjct: 237 AREQGYEVVWPIIRGFYMSPHVPEADYQRWVRYFDRMMADPVFLAQRSTSGLQPFAMTGS 296

Query: 301 PLSEYIAQTVARYRKQSQELGLVR 324
            LS+YI QTV +YRKQSQELGLVR
Sbjct: 297 QLSQYINQTVTQYRKQSQELGLVR 320


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,109,117
Number of extensions: 50043
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)