BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4420.p (603 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [... 1171 0.0 gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease ... 64 4e-11 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 62 1e-10 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 62 2e-10 gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC trans... 58 3e-09 >gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 603 Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/603 (98%), Positives = 598/603 (99%) Query: 1 MQTTTTLARSEQALPARRFRLNWPRGLVVLLTALAIFVPLLLIFYQSFLSAPFFAPVKEL 60 MQTTTTL RSEQALPARRFRLNWPRGLVVLL ALAIFVPLLLIFYQSFLSAPFFAPVKEL Sbjct: 1 MQTTTTLPRSEQALPARRFRLNWPRGLVVLLAALAIFVPLLLIFYQSFLSAPFFAPVKEL 60 Query: 61 TFDSYRFIFDDPDFRQAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAPALMV 120 TFDSYRFIFDDPDFRQAF+NGLTLATGLALIAVPLGGMLAFLMVRTDLPGRS IAPALMV Sbjct: 61 TFDSYRFIFDDPDFRQAFVNGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMV 120 Query: 121 PIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPH 180 PIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPH Sbjct: 121 PIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPH 180 Query: 181 VYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEVFGL 240 VYLYASAAL+SLGSDVEEAARVAGASPLQVALNVSLPMI PALAYSGVLVFFLGFEVFGL Sbjct: 181 VYLYASAALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGL 240 Query: 241 VLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKY 300 VLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKY Sbjct: 241 VLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKY 300 Query: 301 VAIKGKGARQKALPLGKWRWVAFTLIAGWLLFTVVIPLSGIGLRTFVSHWGDGVSLLEVL 360 VAIKGKGARQKALPLGKWRWVAF LIAGWLLFTV+IPLSGIGLRTFVSHWGDGVSLLEVL Sbjct: 301 VAIKGKGARQKALPLGKWRWVAFVLIAGWLLFTVIIPLSGIGLRTFVSHWGDGVSLLEVL 360 Query: 361 TFENLLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLV 420 TFENLLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLV Sbjct: 361 TFENLLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLV 420 Query: 421 PRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVESFIPALRGLRSTIFSVWLA 480 PRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLV+SFIPALRGLRSTIFSVWLA Sbjct: 421 PRAVPGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLA 480 Query: 481 YSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTIPLVRYGLVGAWLMVFL 540 YSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVT+PLVRYGLVGAWLMVFL Sbjct: 481 YSVVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFL 540 Query: 541 IFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFINITLVAVGLGIALRFGVK 600 IFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFINITLVAVGLGIALRFGVK Sbjct: 541 IFEREYSTGVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFINITLVAVGLGIALRFGVK 600 Query: 601 LHD 603 LHD Sbjct: 601 LHD 603 >gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 132/297 (44%), Gaps = 38/297 (12%) Query: 29 VLLTALAIFVPLLLIFYQSFLSAPFFAPVKELTFDSYRFIFDDPDFRQAFINGLTLATGL 88 VL+ AL +PLL F +A + D+YR I DPD+ AF N + Sbjct: 17 VLIYALFSALPLLDTLRLGFYTANDAGVRSFVGLDNYRTILFDPDWSAAFWNAMWNNVKF 76 Query: 89 ALIAV----PLGGMLAFLMVRTDLPGRSLIAPALMVPIFVSPMVIGFGYVVSMGP---VG 141 I + P+G +LA L L G + +P +S ++IGF + + + P VG Sbjct: 77 FCIHMALQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLILSPLWGVG 136 Query: 142 FYTVWVKNLLSVFGFEG--DPWNIYSFTSIVIIAGLT-----HVPHVYLYASAALKSLGS 194 + LL G PW T+++ ++ ++ +P + +YA AL ++ Sbjct: 137 ------EKLLGTVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYA--ALLAVPE 188 Query: 195 DVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEVFGLVLVL-----GDPEG 249 +V EAA GAS +++ + LP+I P L +L F F F L+ + G Sbjct: 189 EVLEAAHAEGASAMRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYA 248 Query: 250 HLVLPTYLYK----LTNKLGTPSYHLMAAVA-----VCLVAVTMPLVMLQRWLLRSA 297 +L TY Y+ ++G+P+ + AAVA V L V V++QR L R A Sbjct: 249 SDLLGTYFYRTFFGYQAQIGSPT--MGAAVATLMFLVILGGVGAYFVLVQRRLTRYA 303 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 14/232 (6%) Query: 1 MQTTTTLA-RSEQALPARRFRLNWPRGL----VVLLTALAIFVPLLLIFYQSFLSAPFFA 55 MQ+T+ A R +Q P R+ R N R + V++L A I VPL + Y S A Sbjct: 16 MQSTSQPASRRQQTSPPRKERFNPIRLMQTPSVLILLAWMI-VPLAMTIYFSVNRYNLMA 74 Query: 56 PVKE--LTFDSYRFIFDDPDFRQAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSL 113 P + + ++Y F+ DP F + N L + I+V +GG L ++ GR + Sbjct: 75 PDQTGFVGLENYAFLLQDPAFWPSIGNTALLIGSVLAISV-IGGTLLAVLFDQPFRGRGI 133 Query: 114 IAPALMVPIFVSPMVIGFGYV-VSMGPVGFYTVWVKNLLSVFGFEGDPW-NIYSFTSIVI 171 ++ P FV P V + + M PV +V L G E W Y S++I Sbjct: 134 ARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHL---GLEPIDWLAEYPMLSVII 190 Query: 172 IAGLTHVPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPAL 223 I +P +L AL+SL +D +EAA++ GA P+++ + LP + A+ Sbjct: 191 IVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHLKRAI 242 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 131/307 (42%), Gaps = 39/307 (12%) Query: 7 LARSEQAL-PARRFRLNWPR----GLVVLLTALAIFVPLLLIFYQSFLSAPFFAPVKELT 61 +AR E L PA W R G+ + L +FVPL+ +FY++ Sbjct: 13 IARGEPPLTPAATAEPFWVRALLIGIALAFLTLFLFVPLVAVFYEALRKG---------- 62 Query: 62 FDSYRFIFDDPDFRQAFINGLTLATGLALIAVPL----GGMLAFLMVRTDLPGRSLIAPA 117 +D Y + D A LTL T A IAVPL G A+ + + + G++L+ Sbjct: 63 WDVYVASITEADAWSAI--KLTLIT--AAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTL 118 Query: 118 LMVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTH 177 + +P VSP++ G YV+ G G+ W++ E D +++ IV+ Sbjct: 119 IDLPFSVSPVISGLIYVLLFGLQGYLGPWLR--------EHDIKILFAVPGIVLATIFVT 170 Query: 178 VPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEV 237 P V ++S GS+ EEAA V GAS + +V+LP I L Y +L Sbjct: 171 FPFVARELIPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGE 230 Query: 238 FGLVLVLGDPEGHL-----VLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRW 292 FG V V+ GH+ +P + L N+ +A++ L VT+ + + W Sbjct: 231 FGAVSVVS---GHIRGETNTIPLQVEILYNEFNITGAFAVASLLAFLALVTLAIKSVIEW 287 Query: 293 LLRSANK 299 L + Sbjct: 288 RLHQQHS 294 >gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 26/265 (9%) Query: 39 PLLLIFYQSFLSAPFFA-PVKELTFDSYRFIFDDPDFRQAFINGLTLATGLALIAVPLGG 97 P+L++ SF + F P+K + Y +F D+ +A N +A +IA LG Sbjct: 36 PILVMIPLSFSDSSFLMYPIKSFSLRWYENLFSSDDWVRAAQNSFIVAPAATVIATVLGT 95 Query: 98 MLAFLMVRTDLPGRSLIAPALMVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFE 157 + A + + D G+ +++ I +SPM++ V + F + + + Sbjct: 96 LAAVGLNKADFRGK-----GILMAILISPMIVPVVVVGVGVYLFFARIGLSD-------- 142 Query: 158 GDPWNIYSFTSIVIIAGLTHVPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLP 217 S+ +++ P V A L+ ++ A+ GASPL+ V+LP Sbjct: 143 -------SYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLP 195 Query: 218 MITPALAYSGVLVFFLGFEVFGLVLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAV 277 +I P L + F F+ L L + PE LP ++ +P+ +AA+A Sbjct: 196 VIAPGLISGALFAFATSFDEVVLTLFVAGPE-QATLPRQMFAGIKDNISPT---IAALAT 251 Query: 278 CLVAVTMPLVMLQRWLLRSANKYVA 302 L+ + L++ W LR NK A Sbjct: 252 ILIIFSTCLLLALEW-LRGRNKAAA 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,820,796 Number of extensions: 75459 Number of successful extensions: 436 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 414 Number of HSP's successfully gapped: 15 Length of query: 603 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 512 Effective length of database: 1,188,985 Effective search space: 608760320 Effective search space used: 608760320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)