BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4419.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 704 0.0 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 255 4e-69 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 234 1e-62 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 224 8e-60 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 221 6e-59 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/362 (95%), Positives = 351/362 (96%) Query: 1 MTELSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPK 60 MTELSVNDLHLDYGTGA ANPILKGVSM+LQRGEVVALLGPSGSGKTTLLRAVAGLESPK Sbjct: 1 MTELSVNDLHLDYGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPK 60 Query: 61 AGTIDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEI 120 AG IDIG RRVFDGAR FEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPS EI Sbjct: 61 AGAIDIGKRRVFDGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEI 120 Query: 121 AKRVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE 180 A RVK VLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE Sbjct: 121 ATRVKAVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE 180 Query: 181 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFT 240 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQ PNTLFT Sbjct: 181 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFT 240 Query: 241 AEFMGSNNKLAAEVLSREGERVTLKLDGGTAVATLRGRDDAKPGEQLTGIIRVEQVRISG 300 AEFMGSNNKLAAEVLSREGERVT+KLDGGTAVATLRGR D +PGEQLTGIIRVEQVRISG Sbjct: 241 AEFMGSNNKLAAEVLSREGERVTVKLDGGTAVATLRGRSDVRPGEQLTGIIRVEQVRISG 300 Query: 301 EQTDNAIRLPLSTCMYLGDRWECLFKVEGGPAGSVGLRAYAPQRLDQGQYWLSLPEQALW 360 E +DNAIRLPLSTCMYLGDRWECLFKV+GGPAGSVGLRAYAPQRLDQG+YWLSLPEQ+LW Sbjct: 301 EASDNAIRLPLSTCMYLGDRWECLFKVDGGPAGSVGLRAYAPQRLDQGEYWLSLPEQSLW 360 Query: 361 AF 362 AF Sbjct: 361 AF 362 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 255 bits (652), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 133/312 (42%), Positives = 192/312 (61%), Gaps = 9/312 (2%) Query: 20 NPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGTIDIGSRRVFDGARQFE 79 N I+K + + ++RGE + LLGPSGSGKTT L +AG E P G I + DG Sbjct: 35 NLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL------DGQLLNR 88 Query: 80 MPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEIAKRVKEVLSQLGLGHLGER 139 +P +RN+G+VFQ+YAL+PH T+A NVAY L +RK A +VK+ L + +G G+R Sbjct: 89 VPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDR 148 Query: 140 YPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALM 199 YP QLSGGQQQRVA+AR LV++PQ++L+DEPL LD +LRE + L+ L RLG++ + Sbjct: 149 YPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVY 208 Query: 200 VTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFTAEFMGSNNKLAAEVLSREG 259 VTHDQ EA+ +SDR+ + + G I+Q +Y+ P+ F A F+G NN+ V S +G Sbjct: 209 VTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVESVQG 268 Query: 260 ERVTLKLDGGTAVATLRGRDDAKPGEQLTGIIRVEQVRIS--GEQTDNAIRLPLSTCMYL 317 E T++L G A+ L A G+ +T +R E++R++ G N+IR ++ +Y Sbjct: 269 EHCTVRLTDGAALTGLNVH-RAHAGQSITACVRPERIRLAAGGSAEPNSIRASIAGLIYF 327 Query: 318 GDRWECLFKVEG 329 GD V G Sbjct: 328 GDHVRVRCTVAG 339 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 234 bits (596), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 138/316 (43%), Positives = 194/316 (61%), Gaps = 18/316 (5%) Query: 17 ASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGTIDIGSRRVFDGAR 76 A+ L+ + +Q+ GE + LLGPSG GKTT LR +AGLE P D G R +F Sbjct: 20 ANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFP-----DEGGRVLFGEED 74 Query: 77 QFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEIAKRVKEVLSQLGLGHL 136 +P E+R +G+VFQ+YAL+P+ +V +N+AYG+K+RK + E A+RV+ +L + L L Sbjct: 75 VTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMVHLQGL 134 Query: 137 GERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLS 196 R QLSGGQ+QRVA+ARAL P+V+LLDEPL+ LDAKLRE R+ L +L+ LG++ Sbjct: 135 SHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGIT 194 Query: 197 ALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFTAEFMGSNNKLAAEVLS 256 A+ VTHDQGEAMA+ DRI+++ G+I Q GTPQ +Y P F AEF+G+ N++ V Sbjct: 195 AIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDGIV-- 252 Query: 257 REGERVTLKLDGGTAVATLRGRDDAKPGEQLTGIIRVEQVRISG--EQTDNAIRLPLSTC 314 G+R+ L TL DA G+ + R E V + E + +R L Sbjct: 253 -AGDRLQLP------TGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRGKLINT 305 Query: 315 MYLGDRWECLFKVEGG 330 +LGDR F++E G Sbjct: 306 FFLGDRTR--FEIEIG 319 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 224 bits (571), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 123/262 (46%), Positives = 169/262 (64%), Gaps = 11/262 (4%) Query: 1 MTELSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPK 60 M ++ L Y G P+L + + + GE V LLGPSG GK+T+LR +AGLE Sbjct: 1 MADIHCQALAKHYAGGP---PVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDIS 57 Query: 61 AGTIDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEI 120 GT+ IG V D +PA ERN+ +VFQ+YAL+PH +V DN+A+GL+ K P+AEI Sbjct: 58 GGTLRIGGTVVND------LPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEI 111 Query: 121 AKRVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE 180 +RV+EV + L L L ER P +SGGQQQR AIARA++ P V L DEPLSNLDAKLR Sbjct: 112 DRRVREVAALLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRA 171 Query: 181 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFT 240 + R ++ L RL + + VTHDQ EAM ++DR++L+ +GRI Q G+P +Y+ P LF Sbjct: 172 QLRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFA 231 Query: 241 AEFMGSN--NKLAAEVLSREGE 260 A F+G+ N L+ V ++G+ Sbjct: 232 AGFIGTPAMNFLSGTVQRQDGQ 253 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 221 bits (564), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 182/296 (61%), Gaps = 16/296 (5%) Query: 23 LKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGTIDIGSRRVFDGARQFEMPA 82 ++ + +++ G+ LLGPSG GK+T LR +AGL+ P +G+I IG R V ++P Sbjct: 19 VRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVT------QLPP 72 Query: 83 EERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEIAKRVKEVLSQLGLGHLGERYPH 142 +R + +VFQSYAL+PH +V DN+ +G+++RK P A R+K V LGL HL ER P Sbjct: 73 AQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGLAHLLERRPA 132 Query: 143 QLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTH 202 QLSGGQQQRVA+ RA++ + V L+DEPLSNLDA+LR+E R +R L +L ++ + VTH Sbjct: 133 QLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTH 192 Query: 203 DQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFTAEFMGSNNKLAAEVLSREGERV 262 DQ EAM+++D+++LL GRIEQ P +Y P T F A F+G+ +L E Sbjct: 193 DQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTP---PMNLLPLEPHAE 249 Query: 263 TLKLDGGTAVATLRGRDDAKPGEQLTGIIRVEQVRISGEQTDNAIRLPLSTCMYLG 318 L + G + RD + QL +R E +R++ + +D+++ + T Y G Sbjct: 250 GLVISGSDVIL----RDLGQTPWQLG--LRPEHIRLA-DASDSSVPAVVETVEYFG 298 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,199,784 Number of extensions: 52888 Number of successful extensions: 623 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 377 Number of HSP's successfully gapped: 153 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)