BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4417.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313812|ref|YP_003777904.1| hypothetical protein Hsero_4530...   199   1e-52

>gi|300313812|ref|YP_003777904.1| hypothetical protein Hsero_4530
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  199 bits (506), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 146/202 (72%), Gaps = 7/202 (3%)

Query: 1   MDRSVVFTPRDPVLPGGIFLNCLCLLAVSGCLGLLLYYQWMLLEPACPLCLLQRIGIILT 60
           M+RS+VFTPR+PV+PGG+ LN LCLLAVS CL  LLY +W L  P C LC+LQR GIILT
Sbjct: 1   MNRSIVFTPREPVMPGGLVLNGLCLLAVSNCLVALLYTEWYLRVPPCELCMLQRTGIILT 60

Query: 61  GIGFLRNLRFGVKSAHYGMALLGALLTGVVALRQLSLEGMAGQQAHGALMLGLHFYTWAI 120
           G+GF++NL  GVKSAHYG+ALLGALLTG++ALRQL ++ +A        ML      +A 
Sbjct: 61  GMGFMKNLCQGVKSAHYGVALLGALLTGLIALRQLWMQPVAA-------MLSQPVCLFAA 113

Query: 121 LFSLVALVVIAGLLGFKSAEYPATLLLLQSAEAPNEPRRIPWGRIVVGAIFVLLVGAQMV 180
           LF+LVA++VIA LLG KSAEYP TLLLLQ+AEA +E   +PWGRI+V A+F+  V   + 
Sbjct: 114 LFALVAIIVIACLLGVKSAEYPGTLLLLQTAEATDEKHGVPWGRILVCAVFIATVAVTLS 173

Query: 181 LSMTGCNRNACDDNLIDRLQLP 202
            SM  C    C  ++++RL  P
Sbjct: 174 GSMINCTSATCGASVLERLGTP 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.145    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 504,879
Number of extensions: 13987
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)