BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4415.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313809|ref|YP_003777901.1| hypothetical protein Hsero_4527...   236   5e-64

>gi|300313809|ref|YP_003777901.1| hypothetical protein Hsero_4527
           [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  236 bits (603), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 131/148 (88%), Gaps = 2/148 (1%)

Query: 1   MQGFKRKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFE 60
           MQGFKRKLVYA LFE LAI+FTTVGL+V  GHDS H+ AAAV SSTIAF+WNFIFN LFE
Sbjct: 1   MQGFKRKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 60

Query: 61  RWEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIY 120
           RWEARQPRRGRNFARRAAHAIGFEGGLV+MLVPLFAWWL ISLW A  LD GLIVFFMIY
Sbjct: 61  RWEARQPRRGRNFARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAFVLDLGLIVFFMIY 120

Query: 121 TYLFNLLFDRIFGLPSSAMPLTAPAVQT 148
           TYLFNLLFDRIFGLPSSAMP  AP+ Q 
Sbjct: 121 TYLFNLLFDRIFGLPSSAMP--APSGQA 146


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 495,404
Number of extensions: 20266
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 126 (53.1 bits)