BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4410.p
         (80 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313804|ref|YP_003777896.1| transmembrane protein [Herbaspi...   128   7e-32
gi|300313803|ref|YP_003777895.1| transmembrane protein [Herbaspi...    55   1e-09

>gi|300313804|ref|YP_003777896.1| transmembrane protein
          [Herbaspirillum seropedicae SmR1]
          Length = 80

 Score =  128 bits (322), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/79 (93%), Positives = 77/79 (97%)

Query: 1  MKPYLISLLMGVLAGLIYAALQVQSPAPPIIALLGLLGMLIGEQVVPIVRRKLAGEPLTA 60
          MKPYLISL MG+LAGLIYAAL VQSPAPPIIALLGLLGMLIGEQVVPIVRRKLAGEPLTA
Sbjct: 1  MKPYLISLFMGILAGLIYAALHVQSPAPPIIALLGLLGMLIGEQVVPIVRRKLAGEPLTA 60

Query: 61 SWFHRECIPKITGTPPPEQ 79
          SWFHREC+PKITGTPPPE+
Sbjct: 61 SWFHRECMPKITGTPPPEE 79


>gi|300313803|ref|YP_003777895.1| transmembrane protein
          [Herbaspirillum seropedicae SmR1]
          Length = 54

 Score = 55.1 bits (131), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 1  MKPYLISLLMGVLAGLIYAALQVQSPAPPIIALLGLLGMLIGEQV 45
          M  YLISL  G+L G++YA  +V+SPAPP IAL+GLLGM++GE++
Sbjct: 1  MSAYLISLCAGILIGVVYALFRVRSPAPPGIALVGLLGMVLGERL 45


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.143    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 213,392
Number of extensions: 5066
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 1,619,870
Length adjustment: 51
Effective length of query: 29
Effective length of database: 1,378,385
Effective search space: 39973165
Effective search space used: 39973165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)