BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4407.p
         (627 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase [Herb...  1254   0.0  

>gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score = 1254 bits (3245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/627 (96%), Positives = 619/627 (98%)

Query: 1   MTTAASPTPDLILLNGKIHTVDQQNPIAEAVAIGGGKFLDVGSATDVMRSKQAHTKVIDL 60
           MTTAAS TPDLILLNGKIHTVD+QNPIAEAVAIGGGKFL+VGSA +VMR KQA T+VIDL
Sbjct: 1   MTTAASVTPDLILLNGKIHTVDKQNPIAEAVAIGGGKFLEVGSAAEVMRLKQAATQVIDL 60

Query: 61  GGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAARTPHPQWVRVVGG 120
           GGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAARTPHPQWVRVVGG
Sbjct: 61  GGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAARTPHPQWVRVVGG 120

Query: 121 WTEFQFAEKRMPTLDELNAAAPDTPVFVLHLYDRALLNRAALQAVGYTKDTPNPPGGEIV 180
           WTEFQFAEKRMPTL+ELNAAAPDTPVFVLHLYDRALLNRAALQAVGYTKDTPNPPGGEIV
Sbjct: 121 WTEFQFAEKRMPTLEELNAAAPDTPVFVLHLYDRALLNRAALQAVGYTKDTPNPPGGEIV 180

Query: 181 RDASGHPTGMLIARPNAMILYATLAKGPTLPQEYQVNSTRQFMRELNRLGVTSAIDAGGG 240
           RDASG+PTGMLIARPNAMILYATLAKGPTLPQEYQVNSTRQFMRELNRLGVTSAIDAGGG
Sbjct: 181 RDASGNPTGMLIARPNAMILYATLAKGPTLPQEYQVNSTRQFMRELNRLGVTSAIDAGGG 240

Query: 241 FQNYPDDYQIINQLAADGQLTIRIAYNLFTQSKGGELADFQKWTGMVKPGDGDDFLRHNG 300
           FQNYPDDYQIIN+LAADGQLTIRIAYNLFTQ+KGGELADFQKWTGMVKPGDGDDFLRHNG
Sbjct: 241 FQNYPDDYQIINKLAADGQLTIRIAYNLFTQNKGGELADFQKWTGMVKPGDGDDFLRHNG 300

Query: 301 AGEMLVFSAADFEDFLEPRPDLAEGMEEELERVVRHLVSNRWPFRLHATYDESISRMLDV 360
           AGEMLVFSAADFEDFLEPRPDLAEGMEEELERVVRHLVSNRWPFRLHATYDESI+RMLDV
Sbjct: 301 AGEMLVFSAADFEDFLEPRPDLAEGMEEELERVVRHLVSNRWPFRLHATYDESIARMLDV 360

Query: 361 FEKVNREIPFDGLHWMFDHAETITERNIERVHALGGGIAIQHRMAFQGEYFIDRYGAEAA 420
           FEKVNR+IPFDGLHWMFDHAETITERNIERV ALGGGIAIQHRMAFQGEYFIDRYG+EAA
Sbjct: 361 FEKVNRDIPFDGLHWMFDHAETITERNIERVKALGGGIAIQHRMAFQGEYFIDRYGSEAA 420

Query: 421 EHTPPIAKMLKMGVPVGAGTDATRVASYNPWTALYWLVSGRTVGGAKLYGAAGRLPRETA 480
           EHTPPIAKML+MGVPVGAGTDATRVASYNPWTALYWLVSGRTVGGAKLYGAAGRLPRETA
Sbjct: 421 EHTPPIAKMLEMGVPVGAGTDATRVASYNPWTALYWLVSGRTVGGAKLYGAAGRLPRETA 480

Query: 481 LELWTAGSAWFSSEQAKKGRIQVGQLADLAVLSADFFSVHEDEIKSIESVMTVVDGKVVY 540
           LELWTAGSAWFSSEQAKKGRIQ GQLADLAVLSADFFSVHEDEIK IES+MTVVDGKVVY
Sbjct: 481 LELWTAGSAWFSSEQAKKGRIQAGQLADLAVLSADFFSVHEDEIKGIESLMTVVDGKVVY 540

Query: 541 GAGPFSAHGPGEIPVLPEWSPVAKVPGHYRAVAKSDAARQKKAMLPHACVGSCGVHGHAH 600
           GAGPFS+HGPGEIPVLPEWSPVAKVPGHYRAVAK+DAARQKKA LPHACVGSCGVHGHAH
Sbjct: 541 GAGPFSSHGPGEIPVLPEWSPVAKVPGHYRAVAKTDAARQKKATLPHACVGSCGVHGHAH 600

Query: 601 DVARKSSVPVSNFAGFWGALGCSCFAF 627
           DVARKSSVPVSNFAGFWGALGCSCFAF
Sbjct: 601 DVARKSSVPVSNFAGFWGALGCSCFAF 627


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,174,860
Number of extensions: 98920
Number of successful extensions: 290
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 536
Effective length of database: 1,188,985
Effective search space: 637295960
Effective search space used: 637295960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)