BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4396.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase [Herb... 395 e-111 gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill... 64 8e-12 gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H... 63 2e-11 gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [... 61 7e-11 >gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/216 (89%), Positives = 201/216 (93%) Query: 1 MTITHFLFDLDGTLMDSDALHHAAFNTILARWDRSIDVDYYKTHIMGASNAMIFGHLFPG 60 M ITHFLFDLDGTLMDSDALHHAAFNTILARWDR IDV+YYKTHIMGASNAMIFGHLFPG Sbjct: 60 MPITHFLFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHIMGASNAMIFGHLFPG 119 Query: 61 MPASEYQPLAEEKEQLFRSQLDQQVAPTPGIERLLEHIARIGGRSAVVTNAPRANAELML 120 MPA +Y PLAEEKE LFRSQLDQ+V PTPGIERLLEHI RIGGRSAVVTNAPRANAELML Sbjct: 120 MPAEQYLPLAEEKESLFRSQLDQRVEPTPGIERLLEHIRRIGGRSAVVTNAPRANAELML 179 Query: 121 KATGLAGRFDTLVIGDELARAKPDPLPYLTALQVLGGQPQQAVAFEDSSSGVKAASGAKV 180 KATGLAG+FDTLVIGDELARAKPDPLPYLT LQ+LGG+ AVAFEDSSSGVKAAS A + Sbjct: 180 KATGLAGQFDTLVIGDELARAKPDPLPYLTGLQLLGGEAGAAVAFEDSSSGVKAASSAGI 239 Query: 181 WTFGMLGGLDETRLRAAGADAVIRDFNAAALWDKLG 216 WTFGMLGGLDE RLRAAGA AVIRDFNAAALWDKLG Sbjct: 240 WTFGMLGGLDEARLRAAGAHAVIRDFNAAALWDKLG 275 >gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum seropedicae SmR1] Length = 215 Score = 64.3 bits (155), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 14/181 (7%) Query: 7 LFDLDGTLMDSDALHHAAFNTILARWDRSIDVDYYKTHIMGASNAMIFGHLFPGMPASEY 66 +FD DGTL+DS+ + A++ +A + + + G S + H+ Sbjct: 12 IFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIAHV----AQLRG 67 Query: 67 QPLAEEKEQLFRSQ----LDQQVAPTPGIERLLEHIARIGGRSAVVTNAPRANAELMLKA 122 Q L EQ R++ L+Q + P G LE + ++ A+ +NAP EL L+ Sbjct: 68 QALPAHFEQELRARMGVMLEQHLQPINGA---LEMVEQLQIPFALASNAPHHKIELCLRV 124 Query: 123 TGLAGRFDTLVIGD-ELARAKPDPLPYLTALQVLGGQPQQAVAFEDSSSGVKA--ASGAK 179 TGL F + ++ R KPDP +L A + LG P + EDS GV+A A+G K Sbjct: 125 TGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLAAGMK 184 Query: 180 V 180 V Sbjct: 185 V 185 >gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [Herbaspirillum seropedicae SmR1] Length = 226 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 82/186 (44%), Gaps = 13/186 (6%) Query: 2 TITHFLFDLDGTLMDSDALHHAAFNTI-----LARWDRSIDVDYYKTHIMGASNAM--IF 54 I + DLDGT++D+ A H A N + L + V++ G N + + Sbjct: 6 NIKAAIIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFVGK---GTENLIRRVL 62 Query: 55 GHLFPGMPASEY--QPLAEEKEQLFRSQLDQQVAPTPGIERLLEHIARIGGRSAVVTNAP 112 + A++Y Q LA E D + PG+ L+ + G R A VTN P Sbjct: 63 AVDYAEDEAAQYFQQALAACTEHYLAINGDYS-SLYPGVLEGLQALRNKGLRLACVTNKP 121 Query: 113 RANAELMLKATGLAGRFDTLVIGDELARAKPDPLPYLTALQVLGGQPQQAVAFEDSSSGV 172 A A +L+ GL F+ + GD + KPDP+P L Q P Q VA DSS+ Sbjct: 122 LAFAVPLLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSNDA 181 Query: 173 KAASGA 178 +AA A Sbjct: 182 QAARAA 187 >gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 61.2 bits (147), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 34/232 (14%) Query: 3 ITHFLFDLDGTLMDSDALH----HAAFNTILARWD-------------RSIDVDYYKTHI 45 ITH + D DG L+DS+++ H +L W RS + H Sbjct: 7 ITHLICDCDGVLLDSESIALRVLHRELLPLLPAWSGAGGADDGEQEEQRSAALHAAIAHR 66 Query: 46 MGASNAMIFGHL---FP-GMPASEYQPLAEEKEQLFRSQLDQQVAPTPGIERLLEHIARI 101 +G ++ G + F G+ A++ AE Q + P PG+ L+ I R+ Sbjct: 67 LGMYTDILLGEVDMEFELGLDAAQ----AERIHQTVALACGDEALPVPGVVEALQAI-RL 121 Query: 102 GGRSAVVTNAPRANAELMLKATGLAGRF-DTLVIGDELARAKPDPLPYLTALQVLGGQPQ 160 A ++APR A L + GL +F + G ++A KP P YL A G P Sbjct: 122 PRAVASNSDAPRIEAGL--RRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPS 179 Query: 161 QAVAFEDSSSGVKAASGAKVWTFGMLGGLDE-----TRLRAAGADAVIRDFN 207 + VA +DS +GV+AA A + G G + +L+ AGA V D Sbjct: 180 RCVAVDDSVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFEDMK 231 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 691,273 Number of extensions: 27275 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 4 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)