BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4395.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313786|ref|YP_003777878.1| outer membrane protein [Herbasp...   476   e-136

>gi|300313786|ref|YP_003777878.1| outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 373

 Score =  476 bits (1226), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 312/373 (83%), Positives = 328/373 (87%), Gaps = 7/373 (1%)

Query: 1   MTTSTLHSLPPASSEAVNPNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG 60
           MTTST+HSLPPAS EAVN NGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG
Sbjct: 1   MTTSTIHSLPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG 60

Query: 61  QGISAKAIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV 120
           +G+SAK IGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV
Sbjct: 61  EGVSAKTIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV 120

Query: 121 ASLATAALLGSAVGSVISGGAKTLGAAGGALGAGAVTTAAAMGPDGAQQAGNLADRASGY 180
           ASLATAALLGSAVGSVISGGAKT+GAAGGALG GA  TAAA+G +GAQQAGNLADRASGY
Sbjct: 121 ASLATAALLGSAVGSVISGGAKTVGAAGGALGTGAAATAAAVGSEGAQQAGNLADRASGY 180

Query: 181 FIDSMFRT----GSNAAAPS---TGAAPAAPLTPPAGSDAASASAMAPLAAPTPADGREL 233
           FID+MFRT    GSN+   S         A  +  A   AA+++  APLAA TPADGREL
Sbjct: 181 FIDAMFRTPTAGGSNSTNSSAAPAAPVTPAAGSDAATGAAAASAPAAPLAASTPADGREL 240

Query: 234 SSAQRMEVARVFGYSLAKQQLADNDKRYLGQLVARHTGLAQADAEKRVADTFAAYQRNLD 293
           SSAQRMEVARVF YSLA QQLAD DKRYLGQLVARHTG++QADAEKRV DTFAAYQRNL+
Sbjct: 241 SSAQRMEVARVFAYSLANQQLADGDKRYLGQLVARHTGMSQADAEKRVGDTFAAYQRNLE 300

Query: 294 DAAAKAKEAADAARKAAAYASLWMFLALLCGAFIASLLATYGGRLRDRNELYGEPVLHHP 353
            AA KAKEAADAARKAAAYASLWMFLALLCGAFIASLLATYGGRLRDRNELY EPVL H 
Sbjct: 301 QAATKAKEAADAARKAAAYASLWMFLALLCGAFIASLLATYGGRLRDRNELYAEPVLRHE 360

Query: 354 VHDPRVDGPEHQL 366
           VH+ R  GPEHQL
Sbjct: 361 VHEHRAGGPEHQL 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 780,529
Number of extensions: 23665
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)