BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4390.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313736|ref|YP_003777828.1| demethylmenaquinone methyltrans...   407   e-115
gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone methyltra...   134   4e-33
gi|300311428|ref|YP_003775520.1| S-adenosylmethionine:2-demethyl...    75   5e-15

>gi|300313736|ref|YP_003777828.1| demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  407 bits (1046), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/229 (93%), Positives = 222/229 (96%)

Query: 1   MSTQPDFIRDFERVDAAIVAQASEFAASILADVAGRRGTLCSRVAPLSPSMRVAGPALTV 60
           MSTQPDFIRD ERVDA++VA+A++F ASILADVAGRRGTLCSRVAPLSPSMRVAGPA+TV
Sbjct: 1   MSTQPDFIRDIERVDASVVAKAAQFPASILADVAGRRGTLCSRVAPLSPSMRVAGPAVTV 60

Query: 61  EVRPGDNLMIHAAMAIAKPGDVLVIDGKGDETCALMGEIMVSQCKASGLAGIIIYGSVRD 120
           EVRPGDNLMIHAAMAIAKPGDVLVIDGKGDETCALMGEIMVSQCKASGLAGIIIYGSVRD
Sbjct: 61  EVRPGDNLMIHAAMAIAKPGDVLVIDGKGDETCALMGEIMVSQCKASGLAGIIIYGSVRD 120

Query: 121 TEALREIGFPVYAVGANPNGPTKNIAGRVNWPISVGGTAVAPGDLIVGDADGVVVVEREK 180
            EA+REIGFPVYAVGANPNGPTKNIAGRVNWPISVGGTAV PGDLIVGDADGVVVVEREK
Sbjct: 121 IEAIREIGFPVYAVGANPNGPTKNIAGRVNWPISVGGTAVQPGDLIVGDADGVVVVEREK 180

Query: 181 AASLLAAAAKKVADETKRLTEIRGGGPLRPTWLESALRKGGVLAEGESL 229
           A SLL AAAKKVADETKRLTEIRGGGPLRP+WLE ALRKGGVLAEGESL
Sbjct: 181 AGSLLEAAAKKVADETKRLTEIRGGGPLRPSWLEGALRKGGVLAEGESL 229


>gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  134 bits (338), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 118/206 (57%), Gaps = 1/206 (0%)

Query: 19  VAQASEFAASILADVAGRRGTLCSRVAPLSPSMRVAGPALTVEVRPGDNLMIHAAMAIAK 78
           + Q     ++ + +  G +G L   + P+ P+ R+AGPALTV+ RPGDNL++H A+  AK
Sbjct: 7   IQQLRALGSATVYEAQGAKGALDHGMKPIDPASRLAGPALTVDARPGDNLVLHYAVLQAK 66

Query: 79  PGDVLVIDGKGDETCALMGEIMVSQCKASGLAGIIIYGSVRDTEALREIGFPVYAVGANP 138
           PGDVLV+D K        G+++       G+AG+++ G VRD   + ++GFPV+  G + 
Sbjct: 67  PGDVLVVDAKAFMEAGPWGDVLTVLAMKKGIAGLVVNGCVRDANTIIDLGFPVFCRGLSI 126

Query: 139 NGPTKNIAGRVNWPISVGGTAVAPGDLIVGDADGVVVVEREKAASLLAAAAKKVADETKR 198
            G  K+  G+VN PI +G   + PGD+IVGD DG+ VV + +    +A++  +   E K 
Sbjct: 127 KGTGKHQPGKVNVPIVIGDVLIHPGDIIVGDRDGLAVVAQSEVEMTIASSMVREEKEQKM 186

Query: 199 LTEIRGGGP-LRPTWLESALRKGGVL 223
              I  G   +    L++ L++ G++
Sbjct: 187 REAIENGASTVELMQLDTILKQYGMV 212


>gi|300311428|ref|YP_003775520.1|
           S-adenosylmethionine:2-demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 163

 Score = 75.1 bits (183), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 44  VAPLSPSMRVAGPALTVEVRPGDNLMIHAAMAIAKPGDVLVIDGKGDETCALMGEIMVSQ 103
            A         GPA T++V   DN+++ A +     G VLV+DG G   CAL+G  +   
Sbjct: 28  FASFGRKQSFCGPARTLKVFE-DNVLVRATLETPGQGHVLVVDGGGSLRCALVGGNLAQL 86

Query: 104 CKASGLAGIIIYGSVRDTEALREIGFPVYAVGANPNGPTKNIAGRVNWPISVGGTAVAPG 163
            + +G AGI++ G VRD   L      + A+  +P    +  AG  +  + + G AV PG
Sbjct: 87  AQDNGWAGILVNGCVRDAAELNACEVGIRALATHPQRSFRKGAGDADIKVGIAGVAVYPG 146

Query: 164 DLIVGDADGVVV 175
           D I  D DGV+V
Sbjct: 147 DWIYADVDGVLV 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 750,306
Number of extensions: 31062
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)