BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4387.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310247|ref|YP_003774339.1| hypothetical protein Hsero_0914...   276   1e-75

>gi|300310247|ref|YP_003774339.1| hypothetical protein Hsero_0914
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  276 bits (705), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 130/240 (54%), Positives = 173/240 (72%)

Query: 1   MDIKFSYRYEQSTLPDVSGQLKMLWRTAVLLDQVGVPMADWCPPADTPENSLRNKAFDDD 60
           M+IKF YR    +LP +   LK LW+ A+LLD +G+P+ DWCPPADTP+N+ RN AFD +
Sbjct: 1   MNIKFPYRSGIESLPSIYEHLKQLWQVAMLLDTIGMPLEDWCPPADTPDNARRNVAFDKN 60

Query: 61  GPSQAALAIFKEEDKDRDEKDVRSMAVWNGLLEEGSILMNHTLVVREYPSKSTFSLQSTS 120
           GPS AA+AIF EE+K    +  R + VWNG  ++G  ++ H L +    S+S+F L S  
Sbjct: 61  GPSPAAVAIFHEEEKADPSEKFRILGVWNGKEDDGGAVLLHKLSIASNHSRSSFELNSKG 120

Query: 121 VPALMEKSKMIQVVKGLLEIWPAPFISVTDPPYDAIHKVFDDRPGVGWMLYLPKVIKASQ 180
           V AL +K  ++Q++  LLEI+PAPFI V+ PPY   H VF+D PGVGWMLYLP+++  +Q
Sbjct: 121 VQALEKKENIVQIINTLLEIFPAPFIQVSPPPYATRHAVFEDHPGVGWMLYLPEILTPAQ 180

Query: 181 VPEAQELIPVEDSTGKQKGTIVVSIMDEPFSVQNEEHIKVATSIEIRLVEQDLLPRRSEM 240
           VPEA ELIPV D   K+KGTIVVS+ +E FSV+N+EH+KVA +IEIRL +QDLLPR S +
Sbjct: 181 VPEAPELIPVLDKDNKRKGTIVVSVPNETFSVKNKEHVKVANAIEIRLADQDLLPRFSNL 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 682,886
Number of extensions: 24734
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)