BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4385.p (191 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313785|ref|YP_003777877.1| autotransporter adhesin protein... 308 1e-85 gi|300310420|ref|YP_003774512.1| inner membrane protein [Herbasp... 189 2e-49 gi|300312345|ref|YP_003776437.1| cell wall surface anchor protei... 186 1e-48 gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088... 164 4e-42 >gi|300313785|ref|YP_003777877.1| autotransporter adhesin protein [Herbaspirillum seropedicae SmR1] Length = 3631 Score = 308 bits (790), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/191 (79%), Positives = 167/191 (87%) Query: 1 VTIEMGGKVLAFDEVAAGDFSITLPAAALAPGLYRDLTVTASRSNGENLGQSTAVQGLKL 60 VT+EMGGKVLAFDEV AGDFSI+L A +LAPGLYRDLTVTASR++G GQSTAVQGLKL Sbjct: 3441 VTVEMGGKVLAFDEVGAGDFSISLSAGSLAPGLYRDLTVTASRASGNEPGQSTAVQGLKL 3500 Query: 61 GWYWAAQAAGDIMGGNGNDDIVVGATRAGAATFIQTGTGDDRIIVGSFGRSDNLAATVGD 120 GWYWAAQ+ DI GGNGNDDIV+G T AA+F+QTG G D++IVG+FGRSDNLAATVGD Sbjct: 3501 GWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFVQTGAGQDKVIVGAFGRSDNLAATVGD 3560 Query: 121 FTLGVDKVQVFNQNLTAANLSRFVTASAGPTANDTRLVIDLDGAGPGTLTYTLHLQNVVY 180 F LGVDKV+VFNQ+LT ANLSRFVTASAG NDTRL IDLDGAGPGTLTYTL LQNV Y Sbjct: 3561 FVLGVDKVEVFNQSLTQANLSRFVTASAGVNPNDTRLSIDLDGAGPGTLTYTLMLQNVAY 3620 Query: 181 NSVNTATIFGV 191 NS NTATIFG+ Sbjct: 3621 NSANTATIFGL 3631 >gi|300310420|ref|YP_003774512.1| inner membrane protein [Herbaspirillum seropedicae SmR1] Length = 1882 Score = 189 bits (479), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/194 (51%), Positives = 133/194 (68%), Gaps = 4/194 (2%) Query: 1 VTIEMGGKVLAFDEVAAGDFSITLPAAALAPGLYRDLTVTASR-SNGENLGQSTAVQGLK 59 +T++MG KVLAFD V AGDF+++ A +APGL+ DL+ TA+ ++G N G ++ V GLK Sbjct: 1690 ITVKMGSKVLAFDTVNAGDFTLSSAANLIAPGLHEDLSFTATNITSGNNNGMTSTVTGLK 1749 Query: 60 LGWYWAAQAAGDIMGGNGNDDIVVGATRAGAATFIQTGTGDDRIIVGSFGRSDNLAATVG 119 LG YWA Q GD GG+GND+ ++GAT+ G T IQT GDD + +G+FG+ N AAT+ Sbjct: 1750 LGHYWATQFLGDTRGGHGNDNFLLGATKNGLNTLIQTNGGDDTLTLGAFGKQGNFAATIT 1809 Query: 120 DFTLGVDKVQVFNQNLTAANLSRFVTASAGPTA--NDTRLVIDLDGAGPGTLTYTLHLQN 177 DFT G DK+ VF +++ NL +FV A P N T++V+DLDGA G TYTLHLQN Sbjct: 1810 DFTAGADKIAVFGKSIDLGNLQQFVKEVA-PIQGGNGTKVVVDLDGAAAGNQTYTLHLQN 1868 Query: 178 VVYNSVNTATIFGV 191 V Y NT T+FG+ Sbjct: 1869 VAYQPANTHTLFGI 1882 >gi|300312345|ref|YP_003776437.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1] Length = 7175 Score = 186 bits (471), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 105/197 (53%), Positives = 134/197 (68%), Gaps = 7/197 (3%) Query: 1 VTIEMGGKVLAFDEVAAGDFSITLPAAALAPGLYRDLTVTASR-SNGENLGQSTAVQGLK 59 VT+ MGGK+LAF++ AAGDF + PA LAPG Y+DL++ A+ ++G + GQSTA+ G Sbjct: 6980 VTVSMGGKLLAFNQFAAGDFKLEAPANVLAPGFYKDLSIVATDVTDGPSNGQSTAIGGQT 7039 Query: 60 LGWYWAAQAAGDIMGGNGNDDIVVGATRAGAATF---IQTGTGDDRIIVGSFGRSDN--L 114 LGWYWA Q+ ++ G G+D I +GA + +QTG G D ++VG+ G +D+ L Sbjct: 7040 LGWYWAPQSLTNLTAGAGDDMIPLGAAATANGIYNTEVQTGAGKDTLVVGASGATDSARL 7099 Query: 115 AATVGDFTLGVDKVQVFNQNLTAANLSRFVTASAGPTANDTRLVIDLDGAGPGTLTYTLH 174 A V DF +G+DKV V Q +TAANL RFVTASA P AN T L IDLDG GPG+LTYTL Sbjct: 7100 MARVSDFMVGMDKVSVAGQTVTAANLDRFVTASAAP-ANGTILSIDLDGPGPGSLTYTLL 7158 Query: 175 LQNVVYNSVNTATIFGV 191 L NV Y NT TIFGV Sbjct: 7159 LVNVQYAQSNTHTIFGV 7175 >gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1] Length = 8016 Score = 164 bits (415), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 129/201 (64%), Gaps = 11/201 (5%) Query: 1 VTIEMGGKVLAFD--------EVAAGDFSITLPAAALAPGLYRDLTVTASRSNGENL--G 50 VT+ +GGK+L +D + A F++ + LAPGLYRDLT T + ++ G Sbjct: 7817 VTVSLGGKLLGYDTFTLSTTDDPATSKFTLQAASNLLAPGLYRDLTATVTNVTEGSIHNG 7876 Query: 51 QSTAVQGLKLGWYWAAQAAGDIMGGNGNDDIVVGATRAGAATFIQTGTGDDRIIVGSFGR 110 Q++ ++ LGWYW Q G+++GG GND +++GA++ + + TG G + +G+FG+ Sbjct: 7877 QTSVIKDASLGWYWVGQGMGNLIGGQGNDGMLLGASQTTSPFTVTTGAGAGTLTLGAFGK 7936 Query: 111 SDNLAATVGDFTLGVDKVQVFNQNLTAANLSRFVTASAGPTANDTRLVIDLDGAGPGTLT 170 S NL ATV DF LG+DKVQV+ Q++T+ANLS F +A+A T L +DLDG G L+ Sbjct: 7937 SSNLTATVTDFQLGLDKVQVWGQSITSANLSSFASATASDNGRSTTLTVDLDGVR-GGLS 7995 Query: 171 YTLHLQNVVYNSVNTATIFGV 191 YTL LQNV +N+ NT TIFGV Sbjct: 7996 YTLQLQNVAFNAANTQTIFGV 8016 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 568,516 Number of extensions: 21138 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 4 Length of query: 191 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 111 Effective length of database: 1,241,070 Effective search space: 137758770 Effective search space used: 137758770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)