BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4383.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine enolpyr...   827   0.0  
gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine 1-carbo...   176   4e-45

>gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine
           enolpyruvyl transferase [Herbaspirillum seropedicae
           SmR1]
          Length = 433

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/433 (95%), Positives = 422/433 (97%), Gaps = 1/433 (0%)

Query: 1   MSNLIVHGGRPLRGDITPSANKNAVLPILCATLLTDQPLRLIGIPEITDVKKILEIFRVL 60
           MSNLIVHGGRPLRGDI PSANKNAVLPILCATLLTDQPLRLIGIPEITDVKKILEIFRVL
Sbjct: 1   MSNLIVHGGRPLRGDIIPSANKNAVLPILCATLLTDQPLRLIGIPEITDVKKILEIFRVL 60

Query: 61  GSEVAVDYASGILELHHRATRFDPKVHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCT 120
           GSEV VDYASG+LELHHR T FDPK+HHLPEEMRSSIMLVPPLLARFGVARLENDVKGCT
Sbjct: 61  GSEVTVDYASGVLELHHRDTHFDPKLHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCT 120

Query: 121 LGVREIDPHVEVFQRFGARVESSPDSLIIRSAA-MQANHHWLDYASVTTTENFVLCAAAA 179
           LGVREIDPHVEVFQRFGA+VESSPDSLIIR+   MQAN HWLDYASVTTTENFVLCAA+A
Sbjct: 121 LGVREIDPHVEVFQRFGAQVESSPDSLIIRTPGRMQANDHWLDYASVTTTENFVLCAASA 180

Query: 180 AGESVLTNAASEPHVQEFCRFMAMMGVEIEGIGTSRVTVRGGGKLGGGEFRFDEDFHEIA 239
            G SVLTNAASEPHVQEFCRFMAM+GV+IEG+GTSRV+VRGGG LGGGEFRFDEDFHEIA
Sbjct: 181 EGTSVLTNAASEPHVQEFCRFMAMLGVQIEGLGTSRVSVRGGGPLGGGEFRFDEDFHEIA 240

Query: 240 TFLAMGAITGGQVRVRNSAPEQFPLIDRTFAKFGVEVVHENGWSHTRQNGPLKVVKPFTS 299
           TFLAMGAITGGQVRVRNSAP+QFPLIDRTFAKFGVEVVHENGWSHTRQNGPLKVVKPFTS
Sbjct: 241 TFLAMGAITGGQVRVRNSAPQQFPLIDRTFAKFGVEVVHENGWSHTRQNGPLKVVKPFTS 300

Query: 300 NILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHVFLG 359
           NILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHVFLG
Sbjct: 301 NILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHVFLG 360

Query: 360 DPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFVENL 419
           DPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFVENL
Sbjct: 361 DPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFVENL 420

Query: 420 RSLGAVVDWVEED 432
           RSLGAVVDWVEED
Sbjct: 421 RSLGAVVDWVEED 433


>gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine
           1-carboxyvinyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 416

 Score =  176 bits (445), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 206/438 (47%), Gaps = 30/438 (6%)

Query: 1   MSNLIVHGGRPLRGDITPSANKNAVLPILCATLLTDQPLRLIGIPEITDVKKILEIFRVL 60
           M  L++ GG+ L GD+T S  KNA LPILCA LLT   L L  +P + DV  I  + + +
Sbjct: 1   MDKLLIRGGKRLSGDVTISGAKNAALPILCAALLTADDLVLSNVPHLQDVVTITGLMKQM 60

Query: 61  GSEVAVDYASGILELHHRATRFDPKV-HHLPEEMRSSIMLVPPLLARFGVARLENDVKGC 119
           G  V  +    +L   +  TR  P+  + L + MR+SI+++ PLLARFG A++     GC
Sbjct: 61  GLRVQENGDQMVLN-GNDITR--PEAPYELVKTMRASILVLGPLLARFGQAKVSLP-GGC 116

Query: 120 TLGVREIDPHVEVFQRFGARVESSPDSLIIRSAAMQANHHWLDYASVTTTENFVLCAAAA 179
            +G R +D H++  Q  GA +      +  ++  ++      D  +VT TEN ++ A  A
Sbjct: 117 AIGSRPVDQHIKGLQAMGAEIHIEGGYIYAKAKRLKGARIVTDMITVTGTENLLMAAVLA 176

Query: 180 AGESVLTNAASEPHVQEFCRFMAMMGVEIEGIGTSRVTVRGGGKLGGGEFRFDEDFHEIA 239
            GE+VL NAA EP V +    +  MG +IEGIGT R+ ++G  +L G       D  E  
Sbjct: 177 DGETVLENAAREPEVGDLANLLVKMGAKIEGIGTDRLVIQGVEQLHGASHEVIADRIETG 236

Query: 240 TFLAMGAITGGQVRVRNSAPEQFPLIDRTFAKF---GVEVVHENGWSHTRQNGPLKVVKP 296
           TFL   A TGG V +R +   +  L+D    K    G  +     W   +     K V  
Sbjct: 237 TFLCAVAATGGDVTLRRT---RAGLLDAALDKLRDAGAILTSGEDWIRIQMARRPKAVSF 293

Query: 297 FTSNILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHV 356
            T+          +P  P D+   F+AL   A+G +     I++       EL++ G  +
Sbjct: 294 RTTE---------YPGFPTDMQAQFMALNCIADGTSHVTETIFENRFMHVQELNRLGTAI 344

Query: 357 FLGDPHRLIT----FGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAH 412
            +     ++T    F G P+          +R + +L +   + +G + +     + R +
Sbjct: 345 DVEGNTAIVTGVEKFIGAPVMATD------LRASASLVIAGLAAQGETVVERIYHLDRGY 398

Query: 413 PKFVENLRSLGAVVDWVE 430
            +    L ++GA +  ++
Sbjct: 399 DRMEAKLSAIGADIQRIK 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,353,166
Number of extensions: 55953
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)