BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4382.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypepti...   582   e-167
gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidas...   207   9e-55

>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine
           carboxypeptidase [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  582 bits (1499), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/398 (75%), Positives = 330/398 (82%), Gaps = 13/398 (3%)

Query: 1   MFCTQQSRSGNDFPFFLLLLRRAGLLARLLLCSALLLVLSVISGKTSEAQAATSTAGKHR 60
           M  T +   G+  P FL LLRRAG +ARL++CS L+L+L+ ++GK SEAQAA S+AGKHR
Sbjct: 1   MLSTLRPPYGHATPLFLSLLRRAGAVARLMMCSLLVLMLATLAGKFSEAQAAGSSAGKHR 60

Query: 61  AVATGVKGRKRNLRKKTPVQSKARAPSHPRRHGRGRAPGAATAAAAVTAAGATAAAVTAA 120
           + ATG KGRKR +RKK    + A  P+             +  A    AA A  A   A 
Sbjct: 61  SAATGAKGRKRTVRKK----ASADKPA---------RTARSRRALRRPAAAAAVAGTAAT 107

Query: 121 PAEASAKTATAVATNTKPELLPRCGFTEASRRHLFSRGIYVLDEQTNTPLFERDADTVAP 180
            A A+  T  +   + KPELL RCGFTEASRRH+FSRG+YVLDEQT TPLFER+ADTVAP
Sbjct: 108 AATAATATPASAPASGKPELLARCGFTEASRRHIFSRGVYVLDEQTGTPLFERNADTVAP 167

Query: 181 IASVTKLMTAMVWLDQKPLPLANRLEVSEDDLDTLKFTHSRLNVGASLSRADMLHIALMS 240
           IASVTKLMTA+VWLDQK L + NRLEV+EDDLDTLKFTHSRL VGASLSRADMLHIALMS
Sbjct: 168 IASVTKLMTAIVWLDQKQLAMGNRLEVTEDDLDTLKFTHSRLGVGASLSRADMLHIALMS 227

Query: 241 SENRAAAAMSRDYPGGRPAFIAAMNARAQALGMSHTHFENATGLSPENVSTPRELAEMVK 300
           SENRAAAA+SRDYPGGRPAFIAAMNARAQALGMSHTHFENATGLSPENVSTPRELA +V+
Sbjct: 228 SENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTHFENATGLSPENVSTPRELAALVQ 287

Query: 301 AANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQVNATVQKTGFINESGHNMVLR 360
           AANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQVNA+VQKTGFINESGHNMVLR
Sbjct: 288 AANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQVNASVQKTGFINESGHNMVLR 347

Query: 361 LLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWLNCSLN 398
           +LVHDRRPVIVTMLGSGSADGSRLDGVRIAKWLNCSLN
Sbjct: 348 MLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWLNCSLN 385


>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score =  207 bits (528), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 159/233 (68%), Gaps = 2/233 (0%)

Query: 161 VLDEQTNTPLFERDADTVAPIASVTKLMTAMVWLDQKPLPLANRLEVSEDDLDTLKFTHS 220
           V+D+  +  LFE+++    PIASVTKLMTA+V ++ +   +   L V++DD+D  K + S
Sbjct: 117 VIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQ-NMEEVLTVTDDDVDREKHSSS 175

Query: 221 RLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNARAQALGMSHTHFEN 280
           RL VGA+LSR DMLHIALMSSENRAA+A+ R+YPGG PAF+AAMNA+A++LGM  T + +
Sbjct: 176 RLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVD 235

Query: 281 ATGLSPENVSTPRELAEMVKAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQV 340
           +TGLS +NV++ R+LA++V AA  Y +IR  S D + M+      LQY +SNRL    + 
Sbjct: 236 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEW 295

Query: 341 NATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWL 393
           +  +QKTGFINE+GH +V+   + + RP+++  L S        D  R+ KWL
Sbjct: 296 DIGLQKTGFINEAGHCLVMYTRI-EGRPIVMVFLDSKGRLSHVGDAARMRKWL 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 923,733
Number of extensions: 31855
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)