BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4380.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase [Herb...   515   e-147
gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase [Herb...   373   e-105

>gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  515 bits (1326), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/299 (82%), Positives = 267/299 (89%)

Query: 1   MPPAPVQRIKGPRRIDAHQHFWRYRSEDYPWIGTGMDLLAQDRLPYQFQPLLEAQGLHAS 60
           MP  P  R K P RIDAHQHFWRYRSEDYPWIG GMDLLAQDRLPYQFQPLLEAQGLHAS
Sbjct: 1   MPTPPAGRCKTPLRIDAHQHFWRYRSEDYPWIGAGMDLLAQDRLPYQFQPLLEAQGLHAS 60

Query: 61  ITVQARPGREETAFLLEMARRDARIVGVIGWDDISSPQLADCMEQWGRHKLLGLRHAMPE 120
           ITVQAR GR+ETAFLLEMARRD RI G+IGW+D+S+P LA+ ME+WGRHKLLGLRH + E
Sbjct: 61  ITVQARQGRDETAFLLEMARRDKRIAGIIGWEDLSAPDLAEQMERWGRHKLLGLRHQLQE 120

Query: 121 TDDATLLLAQPQFNHGVRWLQERDYVLDVLAHERHLPQLRQLCALHDQHWIVLNHLGKPA 180
            DDA  LL     + GVRWLQER Y LDVLAHERHLPQLRQ CA HDQHW+VLNHLGKPA
Sbjct: 121 HDDANTLLTPAPLDQGVRWLQERSYTLDVLAHERHLPQLRQFCARHDQHWVVLNHLGKPA 180

Query: 181 LKEFRKGRAAYERWRRELRELTAMPHVACKISGLLTEADWLRGLCSRDFDHIVQCLDTAL 240
           LKEFRKGRAA+ERWR+ELRELTAMPHVACKISGLLTEADWLRGLC+RDF+HIVQCLDTAL
Sbjct: 181 LKEFRKGRAAFERWRQELRELTAMPHVACKISGLLTEADWLRGLCTRDFEHIVQCLDTAL 240

Query: 241 ELFGPQRLMFGSDWPVCLLAASYARVVAVVREWAAKRLCATDQDALWGESSANIYGLMT 299
           +LFGPQRLMFGSDWPVCLLAASY+RVV VVREW+A RLC +DQDALWGESSA IYGL+T
Sbjct: 241 DLFGPQRLMFGSDWPVCLLAASYSRVVTVVREWSATRLCPSDQDALWGESSARIYGLLT 299


>gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  373 bits (958), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/286 (62%), Positives = 218/286 (76%)

Query: 12  PRRIDAHQHFWRYRSEDYPWIGTGMDLLAQDRLPYQFQPLLEAQGLHASITVQARPGREE 71
           P RIDAHQHFW Y+ + YPWIG GM+LLA DR P Q QPLL+A+GL  SI VQAR GREE
Sbjct: 3   PPRIDAHQHFWFYQPQAYPWIGAGMELLACDRTPGQLQPLLDAEGLGQSIAVQARAGREE 62

Query: 72  TAFLLEMARRDARIVGVIGWDDISSPQLADCMEQWGRHKLLGLRHAMPETDDATLLLAQP 131
           T FLLE+AR + RI GV+GW+D++SP LA  +E+WGR KL+G RH + +  D    +  P
Sbjct: 63  TGFLLELARGNRRIAGVVGWEDLASPHLAANVERWGRDKLVGFRHQLQDEADVGGCVDAP 122

Query: 132 QFNHGVRWLQERDYVLDVLAHERHLPQLRQLCALHDQHWIVLNHLGKPALKEFRKGRAAY 191
            FN GV WLQ +  V DVL + R + +++  CA HD+HW+VL+HLGKPAL EF +G  A+
Sbjct: 123 AFNAGVAWLQRQGMVYDVLVYARQMAEVQAFCARHDRHWLVLDHLGKPALTEFGRGDTAF 182

Query: 192 ERWRRELRELTAMPHVACKISGLLTEADWLRGLCSRDFDHIVQCLDTALELFGPQRLMFG 251
           E W+R+LR L A+PHVACK+SGL+TEADW RGL  +DFD+I  CLDTALE FGPQRLMFG
Sbjct: 183 EGWQRQLRALAALPHVACKLSGLVTEADWQRGLRQKDFDNISLCLDTALEAFGPQRLMFG 242

Query: 252 SDWPVCLLAASYARVVAVVREWAAKRLCATDQDALWGESSANIYGL 297
           SDWPVCLLAASYA+V  VVREWAA RL A +Q+ LWG ++A  YGL
Sbjct: 243 SDWPVCLLAASYAKVAGVVREWAATRLSAAEQELLWGATAARCYGL 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,005,806
Number of extensions: 42808
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)