BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4369.p (691 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313770|ref|YP_003777862.1| TonB-dependent siderophore rece... 1222 0.0 gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitr... 68 3e-12 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 58 2e-09 >gi|300313770|ref|YP_003777862.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 696 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/683 (84%), Positives = 635/683 (92%) Query: 9 PRHLHRVRPIVKLTALSGLLALGAAPWALAQSASAAEDSSLSLGTVEVNARRSGPLQLNN 68 P HLHRVRP+V+ TAL GLLA A P ALAQS +++ED++L+LGTVEV+ RRSGPLQL N Sbjct: 14 PDHLHRVRPLVRATALGGLLAFSAVPDALAQSTASSEDAALTLGTVEVSGRRSGPLQLRN 73 Query: 69 VLTSVDLIGADHIQQQQVQYNWELFAQSPGVMLTQFRQGNESGKLSLRGFNGEGEVNAVK 128 VLTSVDLIGAD +QQQQV YNWELFAQSPGVMLTQFRQGNESGKLS RGFNGEGEVNAVK Sbjct: 74 VLTSVDLIGADRLQQQQVLYNWELFAQSPGVMLTQFRQGNESGKLSFRGFNGEGEVNAVK 133 Query: 129 LLIDGVPSNDNAGGMPFLGTLLPLNIERIEVVRGTNDARYGLHNIAGNINILTREGGNYD 188 LLIDGVPSNDNAGGMPFLGTL PL++ IEVVRGTNDARYGLHNIAGN+NILTR+GGNYD Sbjct: 134 LLIDGVPSNDNAGGMPFLGTLFPLDMAGIEVVRGTNDARYGLHNIAGNVNILTRQGGNYD 193 Query: 189 EARLTYGSFNTRQLQVVKGVENGNWSQNYFLGYEKSDGYRQHAQGENIAFSGKWFYTSDD 248 EARLTYGSFNTRQ+QV KGVENGNWSQNYFLGYEKSDGYR+HAQ ENIAFSGKWFYTSDD Sbjct: 194 EARLTYGSFNTRQVQVAKGVENGNWSQNYFLGYEKSDGYREHAQAENIAFSGKWFYTSDD 253 Query: 249 GRYRTGLSIRHANGYAQEPGYLTAQDARRDPTASYAYAQSDGGNRQMDQVSLHFDAEVDA 308 GRYRTGLSIRHAN YAQEPGYLTA+DAR +P SYAYAQSDGGNRQ+DQVSLHFD ++D Sbjct: 254 GRYRTGLSIRHANAYAQEPGYLTAEDARANPRTSYAYAQSDGGNRQLDQVSLHFDGDIDD 313 Query: 309 QLSLATKLYLNRVRDQRWLRYSSTTSQQERIIDETHYGLLSTATYRPQWKALAGLNDLAL 368 QL++ KLYLNRVRDQRWLRYSSTTSQQER+IDETHYGL++TATYRPQWKAL G+NDLAL Sbjct: 314 QLAVGAKLYLNRVRDQRWLRYSSTTSQQERLIDETHYGLMTTATYRPQWKALEGMNDLAL 373 Query: 369 EGGFNLERQEDQSPRYSTVNKVRVVQTRDHHFVFDTVGAYVQAVITPVSSLRIIPGYRVD 428 EGGFN+ERQEDQSPR++TVNKVRV QTRDHHF FDT GAY+QAVI PV S +IIPGYRVD Sbjct: 374 EGGFNVERQEDQSPRFNTVNKVRVTQTRDHHFTFDTFGAYLQAVIKPVESFKIIPGYRVD 433 Query: 429 HVGGRFNDPSRGVSYGIQDYGIIKQPKLSLVYSPFQQASLYANWGRTFQVGAGAAAYKSN 488 VGG F+DPSRGV YGIQDYG+I+QPKLS+VY+P +QASLYANWGRTFQVGAGAAAYKSN Sbjct: 434 KVGGSFSDPSRGVRYGIQDYGVIRQPKLSVVYAPIKQASLYANWGRTFQVGAGAAAYKSN 493 Query: 489 NNDLRPSINDGWETGIKFTPADWLDGRVAVWEQRASDEVKRRLNDPTGDSENVGRTKRSG 548 NNDLRPSINDGWE+G+KFTP +WLDGR+A WEQRASDEVKRRLNDPTGDSENVGRTKRSG Sbjct: 494 NNDLRPSINDGWESGVKFTPVEWLDGRLAWWEQRASDEVKRRLNDPTGDSENVGRTKRSG 553 Query: 549 VDLQLNLRAGKRTTVWLAYSRQKSEIVTPDPSAPDTMGKEIDHVPRAVYSGGVDYQASAA 608 VDLQLNLRAGKRTT+WLAYSRQ+SEI+TPDP+AP T+GKEIDHVPR ++SGGVDYQA+ Sbjct: 554 VDLQLNLRAGKRTTMWLAYSRQRSEIITPDPTAPATIGKEIDHVPRYLFSGGVDYQATDY 613 Query: 609 LKLSASVNGQGSYYLTTANTGGKFGGYTLFNASATYQVTPSLSLELQLKNLANRYYEYVW 668 LKLS S+NGQGSYYLTTANTGGKFGGYTL +ASA+YQV+P+L+LELQ+KNLANRYYEYVW Sbjct: 614 LKLSTSLNGQGSYYLTTANTGGKFGGYTLVDASASYQVSPTLALELQVKNLANRYYEYVW 673 Query: 669 INDQTRHAPGDGRAVYVSANVKY 691 INDQTRHAPGDGRA Y+SA + Y Sbjct: 674 INDQTRHAPGDGRAAYLSAKLTY 696 >gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitrate transport protein [Herbaspirillum seropedicae SmR1] Length = 703 Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 127/588 (21%), Positives = 225/588 (38%), Gaps = 39/588 (6%) Query: 129 LLIDGVPSNDNAGGMPFLGTLLPL---NIERIEVVRGTNDARYGLHNIAGNINILTRE-- 183 +L+DG+P G P L + PL NIE I+VVRG R+G N+ G IN TR Sbjct: 130 ILLDGIPMAVAPYGQPQL-SFAPLSLNNIESIDVVRGGGAVRFGPQNVGGIINFKTRSIP 188 Query: 184 --GGNYDEARLTYGSF-----NTRQLQVVKGVENGNWSQNYFLGYEKSDGYRQHAQGENI 236 G +A + Y S+ NT+ G + + ++ G+R + Sbjct: 189 TTPGISGDAAVRYNSYGQGGGNTQYTAFAGGQAENGFGMAFLYSGQEGSGWRDKSDEHLN 248 Query: 237 AFSGKWFYTSDDGRYRTGLSIRHANGYAQEPGYLTAQDARRDPTASYAYAQSDGGNRQMD 296 F+ K Y I + + ++ PG L+ DP S + GG R+ Sbjct: 249 DFALKMRYEISPTS-ELYAKINYYDVLSRTPGGLSVAQYAADPFQSTRQRDNWGGTRKGF 307 Query: 297 QVSLHFDAEVDAQLSLATKLYLNRVRDQRWLRYSSTTSQQERIIDETHYGLLSTATYRPQ 356 V + + D Q + Y ++ Q L + T + + G+ T R Sbjct: 308 DVG-YLNTISDRQ-EFEIRTYFSQATRQSTLINPAGTRLSHQPRNYETLGIEPRYTQRFA 365 Query: 357 WKALAGLNDLALEGGFNLERQEDQSPRYSTVNKVRVVQTRDHHFVFDTVGAYVQAVITPV 416 W +D+ + + ER +D + + V T+ + D Y+ I Sbjct: 366 WGGTT--HDVTVGYRYVRERGDDNVYSEAVLTGVLSGFTQFQNST-DAHAGYIDDKIA-F 421 Query: 417 SSLRIIPGYRVDHVGGRFNDPSRGVSYGIQDYGIIKQPKLSLVYSPFQQASLYANWGRTF 476 RI PG R +HV D + SY + + + P +++ Y +Q +L++N+ +F Sbjct: 422 GKWRITPGLRFEHVQSTRYDVANNASYQVSNNKPL--PSINVAYLLTEQLTLFSNYNTSF 479 Query: 477 QVGAGAAA-YKSNNNDLRPSINDGWETGIKFTPADWLDGRVAVWEQRASDEVKRRLNDPT 535 V + S+ N L P + E G+++ A V+ +++ Sbjct: 480 GVVQNSQLNTMSSANPLSPELAKTIEGGVRWKSAR-ASAEATVFHIDFDNQIVSVQGTNP 538 Query: 536 GDSENVGRTKRSGVDLQLNLRAGKRTTV--WLAYSRQKSEIVTPDPSAPDTMGKEIDHVP 593 N+G+T+ G++L ++ +++ + W Y+ A GK++ Sbjct: 539 SVFRNIGKTQHDGIELAMDYAFDQQSVLKGWSVYANYTYTRALQKSGA--NPGKDLPFYA 596 Query: 594 RAVYSGGVDYQASAALKLSASVNGQGSYYLTTANT--------GGKFGGYTLFNASATYQ 645 R + G ++ S + S QG + ANT G+ G+ L+NA ++ Sbjct: 597 RTTDTVGTRFK-SGPWGFNLSTTHQGRQFSDEANTIAESADGSIGEIPGFRLWNAQVDWK 655 Query: 646 V--TPSLSLELQLKNLANRYYEYVWINDQTRHAPGDGRAVYVSANVKY 691 V T + + NL +R Y ++ G R VYV + Sbjct: 656 VPGTKGFDVFAGINNLTDRRYFTRTTDNNLGKLVGAPRTVYVQGRYSF 703 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 124/300 (41%), Gaps = 29/300 (9%) Query: 405 VGAYVQAVITPVSSLRIIPGYRVDHVGGRFNDPSRGVSYGIQDYGIIK--QPKLSLVYSP 462 +G YVQ IT + +++ G R D RF SR G++ P++ +V+ Sbjct: 434 LGLYVQDKITLAAHWKMLAGLRWD----RFEVDSRNRRNGVRSERTAHALSPRIGVVWEA 489 Query: 463 FQQASLYANWGRTFQVGAG-----AAAYKSNNNDLRPSINDGWETGIKFTPADWLDGRVA 517 Y +W + F G + N NDL+P + E GIK ++WLD R++ Sbjct: 490 LPGQHAYLSWSKNFAPVGGDVIGITPDARGNFNDLKPQFSRQVEAGIK---SEWLDRRLS 546 Query: 518 V---WEQRASDEVKRRLNDPT--GDSENVGRTKRSGVDLQLNLRAGKRTTVWLAYSRQKS 572 W Q + R + DP G E G + G++L + V ++ Q + Sbjct: 547 TTLAWFQ--LELFNRNVADPVRPGFFEQSGLERNRGIELSVEGELAAPWFVRAGWAIQSA 604 Query: 573 EIVTPDPSAPDTMGKEIDHVPRAVYSGGVDYQASAALKLSASVNGQGSYYLTTANTGGKF 632 +IV +P +GK V S + Y + + +G+ Y N + Sbjct: 605 KIVQAEPK---FVGKRASGVSGRGGSLFLSYAPTLGWFAELGLTVEGARYADRDNL-LEL 660 Query: 633 GGYTLFNASATYQVTPSLSLELQLKNLAN-RYYEYVWINDQTRHAPGDGRAVYVSANVKY 691 YT ++ Y++ + L + NLAN RYYE Q R PG RA+ ++A K+ Sbjct: 661 PAYTRWDGKMGYRLDEA-EFTLAVTNLANRRYYESATGLSQVR--PGAPRALLLTAAYKF 717 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,228,780 Number of extensions: 96166 Number of successful extensions: 316 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 8 Length of query: 691 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 599 Effective length of database: 1,184,250 Effective search space: 709365750 Effective search space used: 709365750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)