BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4368.p (526 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 298 8e-82 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 290 2e-79 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 288 5e-79 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 275 8e-75 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 273 2e-74 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 298 bits (763), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 206/522 (39%), Positives = 310/522 (59%), Gaps = 16/522 (3%) Query: 11 LPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVHIG 70 L + R+AL FG +L+ + A+GL+ + V L + + N + L L + Sbjct: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 Query: 71 VESFQSVIIISDKAAAEAAMQRGGAAHERFITQRKALL------EAVSDQQTRGLVETIF 124 + +++ ++ ++A + Q A E+ A L EA + ++ R L+ I Sbjct: 64 ALAIRNIALLDEQADMQVESQTL-ARQEKLYADAYAALDKMFTTEAATTERERQLLVQIK 122 Query: 125 AINDQRAE-PAFGRFVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALID---FQTARN 180 ND+ A P + VQL + + EAG L TQ+ P + QA IK+L + F+ N Sbjct: 123 --NDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRP---KQQAWIKSLTELAEFEDQLN 177 Query: 181 QQLQQQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALQVAREIAD 240 + ++ R + A LA +L A + R++ + LG EP +A VAR+IA Sbjct: 178 DEAATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIAS 237 Query: 241 GNLMVRVPVAGHDQASMMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSERT 300 G+L V V D +S+MA++ +MR +L + + A+ ++ AS +IA G+ DLS+RT Sbjct: 238 GDLTATVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRT 297 Query: 301 EIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDID 360 E QA+SL++T ASM EL++ VR + ++ A RLS A + +G + +RV+ M I Sbjct: 298 EEQAASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRIT 357 Query: 361 TSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASR 420 SS K+ DIISVIEG+AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA A++ Sbjct: 358 ASSSKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAK 417 Query: 421 EIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVNQ 480 EIK+LI S+ A S+L +AG M Q+V S+ R +MN+I++A QEQ +GI ++N Sbjct: 418 EIKELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINT 477 Query: 481 ALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 A++Q+D +TQ+NAALVEEA+AA+ L +AS L + V F++ Sbjct: 478 AMVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 290 bits (741), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 192/518 (37%), Positives = 312/518 (60%), Gaps = 10/518 (1%) Query: 11 LPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVHIG 70 L ++ R+AL F ++++L V+ +GLW + V L +V + N+ LA ++ V I Sbjct: 4 LKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVAN-NQQGGLADVMNNSVRIR 62 Query: 71 VESFQSVIIISDKAAAEAAMQRGGAAHERFITQRKALLEAVSDQQTRGLVETIFAINDQR 130 + +++ + + A ++R + + R+ L + T +F + Q Sbjct: 63 ALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDLIAQN 122 Query: 131 A---EPAFGRFVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALIDFQTARNQQLQ--- 184 A EP + V L+ + E + L ++ P ++ + L F+ N Q Sbjct: 123 AADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASAAA 182 Query: 185 QQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALQVAREIADGNLM 244 + R W + A +L A A + ++R++ LGGEP A ++A +IA GNL Sbjct: 183 DTTYRSILTTTWTLVA---GSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLA 239 Query: 245 VRVPVAGHDQASMMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSERTEIQA 304 V +P+A DQ S+MA++ MR +L +V + H+A++++ A+ +IA G+ DLS RTE QA Sbjct: 240 VSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQA 299 Query: 305 SSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDIDTSSG 364 +SL++T +SM E++S V + + +L+ A+ + G EVVERV+ M+DI S+ Sbjct: 300 ASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAY 359 Query: 365 KIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQ 424 KI +II+ +EG+AFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSA++++EI+ Sbjct: 360 KITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRG 419 Query: 425 LILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVNQALIQ 484 LI +SV A KL EAG M +VV+SI +V+ +M++I++A+ EQS+GI ++N A+ Q Sbjct: 420 LIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQ 479 Query: 485 LDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 +D++TQ+NAALVEE+ +A+ + +A+ L+ +V F++ Sbjct: 480 MDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRI 517 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 288 bits (738), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 207/518 (39%), Positives = 306/518 (59%), Gaps = 8/518 (1%) Query: 11 LPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVHIG 70 + + R+ L F ++LL VL G++ +H V + VV N AL +++ + V Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 Query: 71 VESFQSVIIIS--DKAAAEAAMQRGGAAHERFITQRKALLEA----VSDQQTRGLVETIF 124 S +++++ + + EA + + Q+ L A SD++ L + Sbjct: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPK--I 122 Query: 125 AINDQRAEPAFGRFVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALIDFQTARNQQLQ 184 A +AE V+ + E +L Q P Q +KAL + N++ Sbjct: 123 AAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAA 182 Query: 185 QQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALQVAREIADGNLM 244 + S +R R LM ++ A A + L R + + LGGEP A+Q+A +IA+G+L Sbjct: 183 EASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLA 242 Query: 245 VRVPVAGHDQASMMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSERTEIQA 304 V + D S+MAAMR MRDKL +V V ++ + AS EIA G+ DLS RTE QA Sbjct: 243 VVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQA 302 Query: 305 SSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDIDTSSG 364 +L++T +SM +L+S V+ AE + A L+ A+D G +V +V+ MQ I+ SS Sbjct: 303 GALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQ 362 Query: 365 KIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQ 424 K+ DI+SVI+G+AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+A++EIK Sbjct: 363 KVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKV 422 Query: 425 LILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVNQALIQ 484 LI SV SKL +AG+ M +V SI RV+ VM +I+ AN+EQS+GI +VN+A+IQ Sbjct: 423 LIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQ 482 Query: 485 LDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 +DD+TQ+NAALVE+A AA+ L+++A+ L++ V F+L Sbjct: 483 IDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRL 520 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 275 bits (702), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 198/523 (37%), Positives = 312/523 (59%), Gaps = 21/523 (4%) Query: 9 RPLPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVH 68 + L +A+R+A F ++ L + +++ + +D +VND + A DL V+ Sbjct: 6 KNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVN 65 Query: 69 IGVESFQSVII-ISDKAAAE-------AAMQRGGAAHERFITQRKALLEAVSDQQTRGLV 120 ++ + + I I ++ A E A+++ A ++ IT R+ + AV ++ + L Sbjct: 66 EQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDK-ITARQ--VTAVGQKKAKALD 122 Query: 121 ETIFAINDQRAEPAFGRFVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALIDFQTARN 180 E A + +A+ F+ L G A ++ ++ + A +A D Q A+ Sbjct: 123 EARIAFDASKAD-----FLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQL 177 Query: 181 QQLQQQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALQVAREIAD 240 Q ++ D + AC +A +L A GY + R++ K L +A++VA +A Sbjct: 178 QAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPL----TEAVRVAENVAA 233 Query: 241 GNLMVRV-PVAGHDQASMMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSER 299 G+L R+ P + + +M A+R+M D LIE+V V +++ AS EIA G+ DLS R Sbjct: 234 GDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSAR 293 Query: 300 TEIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDI 359 TE QA SL++T ++M E++S VR A+ + A +++ A++ G ++V RV+ M +I Sbjct: 294 TEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEI 353 Query: 360 DTSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAS 419 + SS KIVDII VI+G+AFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAA+ Sbjct: 354 NQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAA 413 Query: 420 REIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVN 479 +EIK LI SV S L +AGA M+QVV S+ V+ ++ +IS+A+ EQS+GI E+N Sbjct: 414 KEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEIN 473 Query: 480 QALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 +A+ Q+D+ TQ+NAALVE+A AA+ ++++A L +S+ F+L Sbjct: 474 RAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 273 bits (698), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 206/537 (38%), Positives = 302/537 (56%), Gaps = 50/537 (9%) Query: 9 RPLPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVH 68 + + + ++AL FG L++L +L I L + + S + AV+ ++ LA Sbjct: 3 KHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPL-------- 54 Query: 69 IGVESFQSVIIISDKAAAEAAMQRGGAAHERFITQRKALLE---AVSDQQTRGLVETI-- 123 AA EA Q G AA ++ + A + A+ D+Q + ++ I Sbjct: 55 --------------YAAREALDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKD 100 Query: 124 ----FAINDQRAEPAFGRFVQLSM----------TGQREEAGAWLATQLNPALSQLQAAI 169 FA N + + G +Q++ +G+ EE +L + +P Q+ + I Sbjct: 101 LGPLFAGNKEFEKVRSG-MLQMAEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDI 159 Query: 170 KALIDFQTARNQQLQ----QQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLG 225 ++ A N + Q + +Q + L + IL A L R + K LG Sbjct: 160 GTVLAQVEAENNRAQDATDKMAQLAALTVAVLTLVVVVISILIA----VLLTRGLLKQLG 215 Query: 226 GEPHDALQVAREIADGNLMVRVPVAGHDQASMMAAMREMRDKLIEVVGVVNHNAQAVAAA 285 GEP A Q+A++IADG+L V D +S++ A++ MRD L+ +V V + A Sbjct: 216 GEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQA 275 Query: 286 SQEIAHGHHDLSERTEIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSG 345 S EIA G+ DLS RTE QASSL++T ++M EL + V+ A+ + A +L+ A++ G Sbjct: 276 SSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQG 335 Query: 346 REVVERVITQMQDIDTSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVA 405 EVV +V+T M I+ SS KIVDIISVI+G+AFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 336 GEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 395 Query: 406 TEVRTLAQRSAAASREIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDIS 465 +EVR+LAQRSA A++EI +LI SV S L +AG M+ VV S+ RV+ V+ +IS Sbjct: 396 SEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEIS 455 Query: 466 SANQEQSTGIGEVNQALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 A+QEQS GI +VN A+ +D+ TQ+N+ALVEEA AA+ +K++A L V TF+L Sbjct: 456 MASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQAGALSGLVATFRL 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,125,142 Number of extensions: 35735 Number of successful extensions: 434 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 268 Number of HSP's successfully gapped: 70 Length of query: 526 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 436 Effective length of database: 1,193,720 Effective search space: 520461920 Effective search space used: 520461920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)