BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4364.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310013|ref|YP_003774105.1| flavin reductase domain, FMN-bi...   117   7e-28

>gi|300310013|ref|YP_003774105.1| flavin reductase domain,
           FMN-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  117 bits (292), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 1/147 (0%)

Query: 29  LRNLMGAYPTGVAIVTMRTASGRPVGLTINSFASLSLDPPLVLWSLVNHSPNLEAFRDCS 88
            R  +  + TGV ++T R A G  +GLT +SF S+SLDPPLVLWSL + + ++  F   S
Sbjct: 18  FRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVLWSLGSKANSMPVFSGNS 77

Query: 89  HFAINVLADGQEELARRFASPAIVDKFEGVSLAHAPEGLPVVEDALTVLVCEHDHCRTVG 148
           H+ IN+L+  Q  LA++FAS  + ++FEGV+   +  G P++E A     C +      G
Sbjct: 78  HYVINILSADQAHLAQQFASK-MENRFEGVAYTLSRTGQPILEGASAWFECHNRSQYPEG 136

Query: 149 DHLLMVGRIVRTNHQPAAPLVFHAGRF 175
           DH++ VG +      P A LVFH GRF
Sbjct: 137 DHVIFVGEVEHCEADPQAALVFHGGRF 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,209
Number of extensions: 22145
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)