BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4359.p
         (505 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...    58   2e-09

>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
            oxidoreductase subunit alpha/beta [Herbaspirillum
            seropedicae SmR1]
          Length = 1180

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 187/475 (39%), Gaps = 69/475 (14%)

Query: 5    PIKIAILAMGGEGGGVLADWIVDLGEANGYFAQTTSVPGVAQRTGATIYYVELFPGAGQA 64
            P  I I  +GG G   +   +       G  A    + G++Q+ G+   +V +      A
Sbjct: 743  PFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGSVTSHVRI------A 796

Query: 65   DARSPVLALMPMPGDVDVVLASELMEAGRAVQRGLVTPDRTNLLCSTHRVYSIGERTAMG 124
              R  + A     G+ D+VL  +++ AG       + P RT  + + H+    G+     
Sbjct: 797  ARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQ-QPPGQFARNP 855

Query: 125  DGRVD----SSALVEHARKAAKRFVSFDMAEAAERAGSVISAVLFGSLCGIGVLPFSRAQ 180
            D         + +VE   + A    +  +A A        +  + G     G LP + A 
Sbjct: 856  DWEFPVEEVKALIVESVGQQADFIDATRLATALMGDSIATNLFMLGYAWQRGELPLTEAS 915

Query: 181  FEATIERGGVGVKPSLKAFAVGH----DQARQAERAAPGTAQDAPLFKPVDVAAIADQQV 236
                IE  GV V+ +  AFA G     D AR  + A P  AQ   L  P        Q +
Sbjct: 916  LLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIAVP--AQPVLLHLP--------QSL 965

Query: 237  AQLVRKAQAYPPAVAPIAVEGVRRLIDYQDPDYAALYLQRLDALAAVAVVPGGRDDELLA 296
             QL+++               V  L DYQD  YAA +L+ ++A+ A     G   D+L  
Sbjct: 966  DQLIKRR--------------VSLLTDYQDAAYAAQFLEVVEAVRAAEAALG--SDKLAT 1009

Query: 297  ESARYLALWMSYEDTIRVADIKTRSSRFARVRGDVRAKQEQLVDINEFMHP----RLEEI 352
              AR L+  M+Y+D   VA + T      + + ++  + E    ++  + P    R +  
Sbjct: 1010 AVARNLSRLMAYKDEYEVARLYTN----GQFQKELAQQFEGDFSLSFHLAPPLLARKDGQ 1065

Query: 353  CETLPAALGRWLARPHWAHRLVRRYTQEGRVIKTSSLPGFLL-LYGLSRWRRC-RRLTLR 410
               L A  G W+ +   A +L+ R            L G LL L+G +  RR  R L ++
Sbjct: 1066 GHLLKARYGGWVMQ---AFKLLAR---------MKGLRGGLLDLFGHTEERRMERELIVQ 1113

Query: 411  YAQETERIERWWQRVASIAALNPALALEVAQCQRLVKGYSDTHARGLRNYDTLMQ 465
            Y Q    +      +  + A N A A+E+AQ    V+GY     + +    T  Q
Sbjct: 1114 YRQLVLDL------LPRLTAANLATAIELAQLPEQVRGYGHVKLKAVHAMRTRQQ 1162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,524,191
Number of extensions: 61665
Number of successful extensions: 251
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 416
Effective length of database: 1,198,455
Effective search space: 498557280
Effective search space used: 498557280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)