BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4357.p (773 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 278 1e-75 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 247 3e-66 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 127 5e-30 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 278 bits (710), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/350 (45%), Positives = 220/350 (62%), Gaps = 5/350 (1%) Query: 410 LLTPFQVREIKLENRVVVSPTLLYAAREGVPGDFHLVHLGARALGGAGLLLTEATAVSPE 469 L +P +R + L NR+ VSP Y+A +G D+HLVHLG+RA+GGAGL+L EATAV E Sbjct: 5 LFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATAVVAE 64 Query: 470 ARMTPGCPGLWNEEQQKAWAKVVDFVHRNSQARIGIQFNHAGRRGSTQLGWEQP--DRPL 527 R++ G+W +E ++ F+ + A GIQ HAGR+ S W+ P P Sbjct: 65 GRISSADLGIWKDEHIAPLRRITRFIEQQG-AVPGIQLAHAGRKSSILRPWDGPAGSVPP 123 Query: 528 ASGNWPLVSASALPYLEGVSQVPAAASIEQLAQIREDFVAAARRAAAAGFDWLELQAGHG 587 ++G W + SALP+ +G S P A S+EQ+ + + F AA+RA AAGF +EL HG Sbjct: 124 SAGGWTPQAPSALPFDDGYS-TPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGAHG 182 Query: 588 CLLSSFLSPLTNARQDQYGGSLPNRLRYVLEVVQAVRAVWPAQLPLSVRISATDWAAGGT 647 L FLSPL+N R D+YGGS NR+R++LE+ +A RAVWP +LPL VR+SATDW GG Sbjct: 183 YLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDGGW 242 Query: 648 TVDEAVEIARQLHAQGADVIDVSSGEVTPAQKPVYGRMFQTPFADRIRNEAGVPTIAVGA 707 T +E V ++++L G D++DVSSG P G +QT FA R++ EAG+ + AVG Sbjct: 243 TPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGIASGAVGM 302 Query: 708 ITEADQVNGIVASGRADLCALSRPFLADPAWLLHESARQGWRQVSWPAAY 757 IT+A Q I+ +G+ADL L+R L DP W LH +A+Q +V+WP Y Sbjct: 303 ITDAIQAEHILRTGQADLVLLARELLRDPYWPLH-AAQQLREEVAWPPQY 351 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 247 bits (630), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/353 (39%), Positives = 195/353 (55%), Gaps = 6/353 (1%) Query: 410 LLTPFQVREIKLENRVVVSPTLLYAAREGVPGDFHLVHLGARALGGAGLLLTEATAVSPE 469 L PF+++++ L NR+ V P Y A EG D+HL H + A GGAGL++ EATAVSPE Sbjct: 4 LFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAVSPE 63 Query: 470 ARMTPGCPGLWNEEQQKAWAKVVDFVHRNSQARIGIQFNHAGRRGSTQLGWEQPDRPLAS 529 R+TPGC G+W++ +A+ VV + + + A GIQ HAGR+ S WE D A Sbjct: 64 GRITPGCTGIWSDALGQAFVPVVQAI-KAAGAVPGIQIGHAGRKASANRPWEGDDHIAAD 122 Query: 530 G--NWPLVSASALPYLEGVSQVPAAASIEQLAQIREDFVAAARRAAAAGFDWLELQAGHG 587 W +S SA+ Y G+ +VP A S++ +A++R+DFV AA RA AGF+WLEL HG Sbjct: 123 DARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAHG 182 Query: 588 CLLSSFLSPLTNARQDQYGGSLPNRLRYVLEVVQAVRAVWPAQLPLSVRISATDW-AAGG 646 L SF S N R D YGGS+ NR R++LE ++AVR VWP L L+VR ++ Sbjct: 183 YLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGRDE 242 Query: 647 TTVDEAVEIARQLHAQGADVIDVSSGEVTPAQKPVYGRMFQTPFADRIRNEAGVPTIAVG 706 T+ E++ + RQ G D+I V+ G P + +G F P A R+R EA VP + Sbjct: 243 ETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSSAW 302 Query: 707 AITEADQVNGIVASGRADLCALSRPFLADPAWLLHESARQGWRQVSW--PAAY 757 V G+ DL + R L +P W + G + SW PA Y Sbjct: 303 GFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKELGVERPSWTLPAPY 355 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 110/338 (32%), Positives = 159/338 (47%), Gaps = 29/338 (8%) Query: 410 LLTPFQVREIKLENRVVVSPTLLYAAREG-VPGDFHLVHLGARALGGAGLLLTEATAVSP 468 L P Q+ ++L+NR+V++P A+ G VP D + RA GAGL++ EAT +SP Sbjct: 10 LFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRA--GAGLIIAEATQISP 67 Query: 469 EARMTPGCPGLWNEEQQKAWAKVVDFVHRNSQARIGIQFNHAGRRGSTQLGWEQPDRPLA 528 E + PG++N+ AW K+ D VH RI +Q H GR L QP L Sbjct: 68 EGKGYAWTPGIYNDAHVAAWKKITDAVHAKG-GRIFLQLWHVGRISHPDL---QPGHAL- 122 Query: 529 SGNWPLVSASALPYLEGVSQ-------VPAAASIEQLAQIREDFVAAARRAAAAGFDWLE 581 P+ ++ P + ++ P A +L I E + AA+ + AGFD +E Sbjct: 123 ----PVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVE 178 Query: 582 LQAGHGCLLSSFLSPLTNARQDQYGGSLPNRLRYVLEVVQAVRAVWPAQLPLSVRISATD 641 + A +G LL FL TN R D YGGS+ NR R +LEVVQAV +V P++ + +R+S Sbjct: 179 IHAANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSER-VGIRLSPIS 237 Query: 642 WAAGGTTVDEAV---EIARQLHAQGADVIDVSSGEVTPAQKPVYGRMFQTPFADRIRNEA 698 A D + QL+ + V G T + V G D + Sbjct: 238 PANDIADSDPKALFSYVVEQLNRFKLVYLHVVEG-ATGGPREVPGGFDLQVLRDLFK--- 293 Query: 699 GVPTIAVGAITEADQVNGIVASGRADLCALSRPFLADP 736 G+ G + D AS RADL A RP++A+P Sbjct: 294 GLYIANNG--YDLDMALQARASNRADLVAFGRPWIANP 329 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,510,914 Number of extensions: 104905 Number of successful extensions: 380 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 372 Number of HSP's successfully gapped: 3 Length of query: 773 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 680 Effective length of database: 1,179,515 Effective search space: 802070200 Effective search space used: 802070200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)