BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4353.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310655|ref|YP_003774747.1| maleate cis-trans isomerase [He...   357   e-100

>gi|300310655|ref|YP_003774747.1| maleate cis-trans isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  357 bits (917), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/248 (70%), Positives = 201/248 (81%)

Query: 5   RSYRIGQIVPSSNTTMETEIPAILRARELNLPERFTFHSSRMRMKHVTKEELAAMDGDSD 64
           R YRIGQIVPSSNTTMETEIPA+L AR+   PERFTFHSSRMRMK V KEELAAMDG+SD
Sbjct: 4   RLYRIGQIVPSSNTTMETEIPAMLTARQAIRPERFTFHSSRMRMKKVVKEELAAMDGESD 63

Query: 65  RCALELSDARVDVLGYACLVAIMSMGRGYHRVSEQRLHQRTVDNGGAAPVVTSAGALVDG 124
           RCA+ELSDARVDVLGYACLVAIM+MGRGYHR SEQRL   T  NG  APVVTSAGAL+D 
Sbjct: 64  RCAVELSDARVDVLGYACLVAIMAMGRGYHRQSEQRLTAHTAANGADAPVVTSAGALIDA 123

Query: 125 LHAIGARKVSILTPYMKPLTQLVIDYIENEGIEVVDSISLEIPDNLEVGRQDPRAPIEIT 184
           L  IGA+K+ ++ PYMKPLT+LV+DYI +EG EV+D  +LEIPDNL+V R DP     I 
Sbjct: 124 LKVIGAKKIVVVAPYMKPLTELVVDYIRHEGYEVLDYRALEIPDNLDVARHDPARLPAIV 183

Query: 185 KRLNTSGVDAIVASACVQMPSLASVQAIEDRTGLPVLSSSVATTYMMLKRLELDTTVPGF 244
            +++TS VDAIV SACVQMPSL  +  +E  TG PV++++VATTY MLKRLELD  VPG 
Sbjct: 184 AQMDTSQVDAIVLSACVQMPSLPVIAQVEAMTGKPVITAAVATTYAMLKRLELDRIVPGA 243

Query: 245 GSLLSGRY 252
           G+LLSG Y
Sbjct: 244 GALLSGAY 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,538
Number of extensions: 28974
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)