BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4352.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310880|ref|YP_003774972.1| transcription regulator protein...    56   1e-09

>gi|300310880|ref|YP_003774972.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 10  NYLPALLGQAWQLLSTQFHAV-VEAHGLSVLEWRVLSILASNGGMSISALADAAVSKQPT 68
           ++ P  L Q  + +S     V  +  GL+  EWR+L+ LA  G M  S L   A   +  
Sbjct: 17  DFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASLDKMQ 76

Query: 69  VTRLLLRLEAQGHVERTTSQDDRRFTLVKVTRNGRRLVSGLIELAEAHEREVLASMNPQK 128
           V+R L R+E  G + R  S  D R  +VK T   R+L   ++ + E  E  +L +++  +
Sbjct: 77  VSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQREAFLLEALSKTE 136

Query: 129 VEMLKELLQEIITR 142
            E L   +Q++  R
Sbjct: 137 REALMSAMQKVRER 150


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 413,422
Number of extensions: 14331
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)