BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4347.p (258 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313756|ref|YP_003777848.1| nitrate/sulfonate/bicarbonate A... 511 e-146 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 155 2e-39 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 155 4e-39 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 154 7e-39 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 150 1e-37 >gi|300313756|ref|YP_003777848.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 511 bits (1315), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/258 (96%), Positives = 256/258 (99%) Query: 1 MSYIDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 MSYI+IRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL Sbjct: 1 MSYIEIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 Query: 61 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQ 120 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELP++ LLGRLFGG+KRRARE+ Sbjct: 61 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPRSALLGRLFGGTKRRAREE 120 Query: 121 AAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 AAQLLHRVGLGHAL LYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH Sbjct: 121 AAQLLHRVGLGHALELYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 Query: 181 TLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA 240 TLLLDLW+DSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA Sbjct: 181 TLLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA 240 Query: 241 RAREQAGKLASLITAKES 258 RAREQAGKLASLITAKES Sbjct: 241 RAREQAGKLASLITAKES 258 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 155 bits (393), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 17/225 (7%) Query: 1 MSYIDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 M+ + IRN+ ++YD N V+ +NL +E+G+F VG SGCGKST LR++ G E S G L Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 LLQGQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRR-- 116 + + P + RGV VFQ Y+++PH+++ DN+A GL ++ G SK Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGL---------KIAGKSKAEID 111 Query: 117 -AREQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGI 175 A + AA++LH + H L+ P +LSGG +QR+AI +A+ +P V L DEP LD + Sbjct: 112 AAVQHAAKILH---IDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAAL 168 Query: 176 RKEMHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD 220 R +M L D T+ VTHD E TL +++V + R++ Sbjct: 169 RVKMRLEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIE 213 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 133/244 (54%), Gaps = 11/244 (4%) Query: 3 YIDIRNVWQQYD--QNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 ++D R+V+ YD +E ++L+ G+F +VG SGCGKSTF++L G ++P++G + Sbjct: 5 FVDFRHVYLAYDGAAEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNRGSV 64 Query: 61 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQ 120 ++ GQ P G+ FQ ++ P LDNV + LE+ + R F K E+ Sbjct: 65 VIDGQTVTG-PLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEP--YRRDFKQKKAEYTER 121 Query: 121 AAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 A LL VGL + +P LSGGMQQR +I +ALI P++LLLDEPFGALD R+E+ Sbjct: 122 ALSLLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELW 181 Query: 181 TLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDK------VRVDPQYPQAYGAHITYD 234 +L DLW + V +VTHDL E L + V K VR + P+ TY Sbjct: 182 CVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVRRENPLPRPCPLETTYT 241 Query: 235 IALN 238 N Sbjct: 242 DGFN 245 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 154 bits (389), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 10/196 (5%) Query: 19 LERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQGQPFPAEPDATRGVV 78 L+R++L + G F +G SGCGKST L + G S+G++ L GQP P A RGVV Sbjct: 22 LDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSG-PGAERGVV 80 Query: 79 FQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQAAQLLHRVGLGHALNLYP 138 FQ+ S+ P +V DNVA+GL + G SK +RE+A +LL VGL P Sbjct: 81 FQKDSLLPWKSVQDNVALGL---------KFAGVSKSDSRERAQELLRLVGLQDFARAAP 131 Query: 139 SSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHTLLLDLWQDSGLTVFMVT 198 LSGGM+QR+ +A+AL P++LL+DEPFGALD R++M LL+ +W +G VF +T Sbjct: 132 YELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFIT 191 Query: 199 HDLSEGFTLGTRLLVF 214 H + E LGT ++V Sbjct: 192 HSIEEALFLGTEVIVM 207 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 128/226 (56%), Gaps = 20/226 (8%) Query: 1 MSYIDIRNVWQQYDQNV-VLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQ 59 M++++I+ + + YD VL LNL + +G+FC LVG SGCGKST LR+L G E S G+ Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 LLLQGQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKR-- 115 L + GQ P A RG+ VFQ Y+++PH+NV N+A GL++ G SK Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVA---------GNSKSDI 111 Query: 116 --RAREQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDP 173 R R AA L + H L P LSGG +QR+AI +A++ +PR+ L DEP LD Sbjct: 112 DARIRHAAAIL----KIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDA 167 Query: 174 GIRKEMHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRV 219 +R + + L + T+ VTHD E TLG +++V + R+ Sbjct: 168 ALRVQTRLEIAKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRI 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 849,961 Number of extensions: 37803 Number of successful extensions: 506 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 145 Length of query: 258 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 175 Effective length of database: 1,226,865 Effective search space: 214701375 Effective search space used: 214701375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)