BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4344.p (1207 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum... 2162 0.0 gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylas... 348 2e-96 gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin sub... 345 1e-95 gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspiril... 332 1e-91 gi|300313401|ref|YP_003777493.1| allophanate hydrolase subunit 2... 183 9e-47 >gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 2162 bits (5601), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1088/1207 (90%), Positives = 1134/1207 (93%) Query: 1 MFDHLLIANRGAIACRILRTLRTLEVTGVCVYSEADLGSLHVLQADRAISLGEGAAAQTY 60 MFDHLLIANRGAIACRILRTLRTL+VTGVCVYSEADLGSLHVLQADRAISLGEG AAQTY Sbjct: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRLFGLKHTAR 120 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLR+FGLKHTAR Sbjct: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 Query: 121 ALAREQGVPMLEGTGLLENLQEALAAAAQVAYPVMLKSTAGGGGIGMRVCRSDEELVDAF 180 ALAREQGVPMLEGT LLE++ +ALAAA++V YPVMLKSTAGGGGIGMRVCRSD EL DAF Sbjct: 121 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELADAF 180 Query: 181 ESVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE 240 +SVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDG+GEVIALGVRDCSVQRRNQKVLEE Sbjct: 181 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRGEVIALGVRDCSVQRRNQKVLEE 240 Query: 241 TPAPNLPAGMADALCAAAIKLARAVNYRSAGTVEFVYDSQAGQFYFLEVNTRLQVEHGVT 300 TPAPNLP GMA+ALCAAAIKLA+AVNYRSAGTVEFVYDS AGQFYFLEVNTRLQVEHGVT Sbjct: 241 TPAPNLPDGMAEALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT 300 Query: 301 EQVWGVDLVRWMIELAAGELPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLTAV 360 EQVWGVDLVRWMIELAAG+LPPL QLAA LQP GHAIQARLYAEDPGRQFQPCPGLLTAV Sbjct: 301 EQVWGVDLVRWMIELAAGDLPPLAQLAAGLQPRGHAIQARLYAEDPGRQFQPCPGLLTAV 360 Query: 361 AFPPADGRALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARLALDAALEATQLYGVE 420 FPP DG+ALRIDTWVEAGCEI PYFDPMIAKLISWQPTREAARLALDAAL AT LYGVE Sbjct: 361 DFPPVDGQALRIDTWVEAGCEIAPYFDPMIAKLISWQPTREAARLALDAALRATLLYGVE 420 Query: 421 TNQHYLRQILADAPFASGQPWTRCLEHLTYHADTVEVLAPGTQTTVQDHPGRIGYWAVGV 480 TNQHYLRQILAD PFASGQPWTRCLE L Y ADTVEVLAPGTQTTVQDHPGRIGYWAVGV Sbjct: 421 TNQHYLRQILADVPFASGQPWTRCLEQLVYRADTVEVLAPGTQTTVQDHPGRIGYWAVGV 480 Query: 481 PPSGPMDERALRLGNRLLGNASDAAGLEVTMSGPTLRFNTVAVVAVTGADIVVQIDGVVQ 540 PPSGPMDERALRLGNRLLGNA +AAGLEVTMSGP LRFNT A+V VTGA I V +DGV Q Sbjct: 481 PPSGPMDERALRLGNRLLGNAEEAAGLEVTMSGPILRFNTAAMVVVTGAVIPVLLDGVAQ 540 Query: 541 PMHTVLHIAAGSTLKLGVIRGAGARSYLAVRGGLQVPTYLGSRSTFTLGQFGGHGGRALA 600 PM TVLHIAAGSTLKLG I GAGARSYLAVRGG+QVPTYLGSRSTFTLGQFGGH GRALA Sbjct: 541 PMATVLHIAAGSTLKLGAISGAGARSYLAVRGGVQVPTYLGSRSTFTLGQFGGHAGRALA 600 Query: 601 TGDILHLAPLAEAAATKVGQALPPGLYPALEPVRKVRVIYGPHGAPEYFTPAYIDTFFAT 660 +GDILHLAPLA A T+ GQ LP LYPALE VR+VRVIYGPHGAPEYFTPAY++TFFAT Sbjct: 601 SGDILHLAPLAADAMTQAGQTLPAALYPALEAVRQVRVIYGPHGAPEYFTPAYMETFFAT 660 Query: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD Sbjct: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 Query: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFVPVDVAAARRIALAAHQEITALQVQAVA 780 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFVPV+V ARRIALAA + +LQ Q V Sbjct: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFVPVEVNTARRIALAAQAGVASLQPQPVD 780 Query: 781 WAPVALASPIVLDLGHDDRRLVARLSGDANLLLEVGSPQLDLVLRFRVHALIAALEEQAL 840 W+P LASPIVLDLG D+RRLVARLSGDANLLLEVGSPQLDLVLRFRVHALI ALEEQAL Sbjct: 781 WSPAPLASPIVLDLGQDERRLVARLSGDANLLLEVGSPQLDLVLRFRVHALITALEEQAL 840 Query: 841 PGVIDLTPGIRSLQVHYQPEALPLQRLLDTVAGLWDAVCARQNLTVSSRIVHLPLSWDDP 900 PGVIDLTPGIRSLQVHYQPEALPL LL T+AGLWDAVCA +NLTVSSRIVHLPLSWDDP Sbjct: 841 PGVIDLTPGIRSLQVHYQPEALPLPTLLQTIAGLWDAVCASENLTVSSRIVHLPLSWDDP 900 Query: 901 ACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKDLGAVRQTVFDASYLVMGLGDVYLGA 960 ACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKD+GAVR+TVFDASYLVMGLGDVYLGA Sbjct: 901 ACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKDIGAVRETVFDASYLVMGLGDVYLGA 960 Query: 961 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFVGRTLQMWNRY 1020 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLC+YGMEGPGGYQFVGRTLQMWNRY Sbjct: 961 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRY 1020 Query: 1021 REVAAFGGKPWLLRFFDQIRFYPVTAEELLTIRRDFPLGRFDLQIEQTQLSLSDYQAFLQ 1080 REVAAF GKPWLLRFFDQIRFYPVTAEEL TIRRDFPLGRF++ IE+TQL+L+DYQ FLQ Sbjct: 1021 REVAAFRGKPWLLRFFDQIRFYPVTAEELQTIRRDFPLGRFEVGIEETQLNLADYQDFLQ 1080 Query: 1081 QEAAGIAAFREHQQAAFDAERQRWIASGQANFEIEEVSAASDQGPPLQAGQMAVDAPIAG 1140 +EA GIAAFR+HQQAAFDAERQRWIASGQAN+E EE SA + + PLQ GQMAVDAPIAG Sbjct: 1081 READGIAAFRQHQQAAFDAERQRWIASGQANYESEESSAIAQEAAPLQDGQMAVDAPIAG 1140 Query: 1141 NLWQVKVSPGQRVAQGELLMILESMKMEINIAAPEAGIVAEVRVQPGSPVRAGQCVLVME 1200 NLWQVKVSPGQRVAQGELLMILESMKMEI+IAAP AG+VAEVRVQPGSPVRAGQCVLVME Sbjct: 1141 NLWQVKVSPGQRVAQGELLMILESMKMEIHIAAPAAGVVAEVRVQPGSPVRAGQCVLVME 1200 Query: 1201 ASGQERA 1207 + +E A Sbjct: 1201 DTEEEVA 1207 >gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 671 Score = 348 bits (892), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 260/644 (40%), Positives = 346/644 (53%), Gaps = 57/644 (8%) Query: 1 MFDHLLIANRGAIACRILRTLRTLEVTGVCVYSEADLGSLHVLQADRAISLGEGAAAQTY 60 MF +LIANRG IACR+ T R L + V VYS+AD + HV D ++ LG A ++Y Sbjct: 1 MFTKILIANRGEIACRVAATARRLGIATVAVYSDADARAKHVAACDESVRLGPAPARESY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRLFGLKHTAR 120 L +KI+AAA +GAQAIHPGYGFLSENA FA+AC AG+ F+GP + + G K A+ Sbjct: 61 LCAEKIIAAALATGAQAIHPGYGFLSENAGFAQACAQAGLVFIGPPASAIEAMGSKAAAK 120 Query: 121 ALAREQGVPMLEG-------TGLLENLQEALAAAAQVAYPVMLKSTAGGGGIGMRVCRSD 173 AL + VP++ G +GLL + A ++ YPV+LK++AGGGG GMRV Sbjct: 121 ALMEQAAVPLVPGYHGEEQESGLLHS------QADRIGYPVLLKASAGGGGKGMRVVERS 174 Query: 174 EELVDAFESVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRR 233 E+ A S +R +F D V +EKY+ R RH+E+QVF DG G + L RDCSVQRR Sbjct: 175 EDFDAALASCKREAIASFGDDRVLVEKYLTRPRHIEIQVFADGHGHCVYLFERDCSVQRR 234 Query: 234 NQKVLEETPAPNLPAGMADALCAAAIKLARAVNYRSAGTVEFVYDSQAGQFYFLEVNTRL 293 +QKVLEE PAP + A+ AA+ ARAV Y AGTVEF+ + Q G FYF+E+NTRL Sbjct: 235 HQKVLEEAPAPGMSEERRAAMGEAAVAAARAVGYVGAGTVEFIAN-QDGSFYFMEMNTRL 293 Query: 294 QVEHGVTEQVWGVDLVRWMIELAAGELPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPC 353 QVEH VTE + G+DLV W + +AAG+ PL+Q L+ GHAI+AR+YAE+P + F P Sbjct: 294 QVEHPVTEMITGLDLVEWQLRVAAGQALPLKQ--EQLRIHGHAIEARIYAENPEKGFLPA 351 Query: 354 PGLLT------AVAF-----PPADGRALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREA 402 G LT AV F P D +RID V G I P++DPMIAKLI W P R+A Sbjct: 352 IGTLTRMRSAAAVEFRLGQSAPGDPAHVRIDAGVREGDAISPFYDPMIAKLIVWGPDRDA 411 Query: 403 ARLALDAALEATQLYGVETNQHYLRQILADAPFASGQPWTRCLEHLTYHADTV--EVLAP 460 A + AL Q+ G+ TN +L++++A F++ T +E H DT+ +P Sbjct: 412 ALRNMQRALAQYQVVGLATNIAFLQRLVAGQAFSTAALDTGLIER---HRDTLFPPPSSP 468 Query: 461 GTQTTVQDHPGRIGYWAVGVPPSGPMDER-ALRLGNRLLGNASDAAGLEVTMSGPTLRFN 519 T+T + S P +R RL RLL TLRF Sbjct: 469 DTETLALAIAAILQQEHAQAERSDPWSQRNGWRLNTRLL---------------RTLRFE 513 Query: 520 TVAVVAVTGADIVVQIDGVVQPMHTVLHIAAGSTLKLGVIRGAGARSYLAVRGGLQVPTY 579 A D VQ+D H L + G T L + G +++ G Sbjct: 514 HDA------GDTTVQLDYAGDGQHWSL-LTNGQTHALQLHAADGDTLIISLDGRTLRADV 566 Query: 580 LGSRSTFTLGQFGGHGGRALATGDILHLAPLAEAAATKVGQALP 623 L R L F HG +L D L A +EA ++ +P Sbjct: 567 L--REGEWLHVFDAHGQHSLRHVDPLAHAGHSEAEGGRLTAPMP 608 >gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae SmR1] Length = 462 Score = 345 bits (886), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 203/444 (45%), Positives = 286/444 (64%), Gaps = 6/444 (1%) Query: 4 HLLIANRGAIACRILRTLRTLEVTGVCVYSEADLGSLHVLQADRAISLGEGAAAQTYLAV 63 LLIANRG IA RI+R + L +T V S+AD SL AD +G A ++YL V Sbjct: 7 KLLIANRGEIAVRIIRAAQALGITTVAACSDADTDSLAARMADEVQRIGPARADRSYLNV 66 Query: 64 DKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRLFGLKHTARALA 123 D +L AARDSGA A+HPGYGFLSENAAFAEA AAG+ FVGP +R G K AR A Sbjct: 67 DALLKAARDSGADALHPGYGFLSENAAFAEAVNAAGLIFVGPQADTIRRMGDKAEARRTA 126 Query: 124 REQGVPMLEGT-GLLENLQEALAAAAQVAYPVMLKSTAGGGGIGMRVCRSDEELVDAFES 182 GVP++ G+ G LE+L ALA A ++ YP+++K++AGGGG G+R+ R EL F Sbjct: 127 AAAGVPVVPGSAGELEDLATALACADEIGYPLLIKASAGGGGRGIRMARDATELAREFPL 186 Query: 183 VRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEETP 242 + Q F A V++E++I RARH+EVQ+ GDG+ + L R+CS+QRR QKVLEE P Sbjct: 187 AQAEAQAAFGSAAVYLERFIRRARHIEVQILGDGE-RAVHLFERECSLQRRRQKVLEEAP 245 Query: 243 APNLPAGMADALCAAAIKLARAVNYRSAGTVEFVYDSQAGQFYFLEVNTRLQVEHGVTEQ 302 +P L ALC +A++LA ++YR AGT+E+++D ++G+F+F+E+NTR+QVEH VTE Sbjct: 246 SPALTPAQRQALCDSAVRLAERLHYRGAGTLEYLFDDESGEFFFIEMNTRIQVEHPVTEM 305 Query: 303 VWGVDLVRWMIELAAGELPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLTAVAF 362 + G+DLV+ M+ +A GE PL + ++ G A++ R+ AEDP R F PCPG + + + Sbjct: 306 ITGIDLVQAMLRIAGGE--PLGLQQSDIRMQGAALEMRINAEDPERNFFPCPGTVAELQW 363 Query: 363 PPADGRALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARLALDAALEATQLYGVETN 422 P +G +R+++ + AG IPPY+D ++AKL+ R A AA+ AT++ G+ T Sbjct: 364 PQGEG--IRVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAVLATRITGMATT 421 Query: 423 QHYLRQILADAPFASGQPWTRCLE 446 + +LADA S + T LE Sbjct: 422 LSLHQWLLADARVQSARFDTGALE 445 >gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 332 bits (851), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 273/449 (60%), Gaps = 9/449 (2%) Query: 1 MFDHLLIANRGAIACRILRTLRTLEVTGVCVYSEADLGSLHVLQADRAISLGEGAAAQTY 60 MF+ +LIANRG IA RI R R L + V V+SEAD + +V AD ++ +G + +Y Sbjct: 1 MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADREAKYVKLADESVCIGPAPSTLSY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRLFGLKHTAR 120 L + I++AA + AQAIHPGYGFLSENA FAE E +G F+GP +R+ G K +A+ Sbjct: 61 LNMPAIISAAEVTDAQAIHPGYGFLSENADFAERVEKSGFVFIGPRAENIRMMGDKVSAK 120 Query: 121 ALAREQGVPMLEGT--GLLENLQEALAAAAQVAYPVMLKSTAGGGGIGMRVCRSDEELVD 178 GVP + G+ L +N +E + A ++ YPV++K+ GGGG GMRV ++ L++ Sbjct: 121 QAMIRAGVPCVPGSDGALPDNPKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALIN 180 Query: 179 AFESVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVL 238 A + F + V++EKY+E RH+E+Q+ D + I LG RDCS+QRR+QKV+ Sbjct: 181 AVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQKVI 240 Query: 239 EETPAPNLPAGMADALCAAAIKLARAVNYRSAGTVEFVYDSQAGQFYFLEVNTRLQVEHG 298 EE PAP +P + + + + R +NYR AGT EF+Y+++ +FYF+E+NTR+QVEH Sbjct: 241 EEAPAPGIPRKIIEKIGERCAEACRKMNYRGAGTFEFLYENE--EFYFIEMNTRVQVEHP 298 Query: 299 VTEQVWGVDLVRWMIELAAGELPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLT 358 VTE + GVD+V+ I +AAGE L ++ GHAI+ R+ AEDP + F P PG +T Sbjct: 299 VTEMITGVDIVQEQIRIAAGE--KLRYRQRDIELKGHAIECRINAEDPFK-FIPSPGRIT 355 Query: 359 AVAFPPADGRALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARLALDAALEATQLYG 418 A P G +R+D+ +G +PP +D M+ K+I++ TRE A + AL + G Sbjct: 356 AWHVP--GGPGIRVDSHAYSGYFVPPNYDSMVGKVIAYGATREQAIRRMQIALSEMVVEG 413 Query: 419 VETNQHYLRQILADAPFASGQPWTRCLEH 447 + TN R+++ DA F G LEH Sbjct: 414 ISTNIPLHRELMVDARFFEGGTNIHYLEH 442 >gi|300313401|ref|YP_003777493.1| allophanate hydrolase subunit 2 [Herbaspirillum seropedicae SmR1] Length = 325 Score = 183 bits (464), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 171/311 (54%), Gaps = 11/311 (3%) Query: 454 TVEVLAPGTQTTVQDHPGRIGYWAVGVPPSGPMDERALRLGNRLLGNASDAAGLEVTMSG 513 T++V PG T+VQD GR GY+ +G+PPSG +D+ ALR N L+GN + + LE ++ G Sbjct: 2 TIKVKQPGLATSVQDG-GREGYYHLGIPPSGALDQYALRSANLLVGNHASTSALECSLLG 60 Query: 514 PTLRFNTVAVVAVTGADIVVQIDGVVQPMHTVLHIAAGSTLKLGVIRGAGARSYLAVRGG 573 P L F + A+VAVTGA + ++DG +P+ T + +G L + AGARSYLA+ GG Sbjct: 61 PQLEFRSDALVAVTGARMQPRVDGSERPLDTAFMVRSGQVLSFDYPK-AGARSYLAIAGG 119 Query: 574 LQVPTYLGSRSTFTLGQFGGHGGRALATGDILHLAPLAEAAATKV-GQALPPGLYPALEP 632 + VP L SRST+ LG GG GR LA D L PL A+ + G+ LP L P + Sbjct: 120 IDVPVVLESRSTYALGALGGWQGRKLAKDDEL---PLGRASPKAIEGRTLPLSLVPVYDR 176 Query: 633 VRKVRVIYGPHGAPEYFTPAYIDTFFATDWEVHFNSSRTGVRLIGPKPEWV--RDSGGEA 690 +RV+ G + T ++ FF W V + R G R G + R+ A Sbjct: 177 EATLRVVPGLY--IHRLTDEAVERFFDDTWTVGSEADRIGYRFKGGQAMQFRPREQPFGA 234 Query: 691 GLHPSNIHDNPYAVGAVDFTGDM-PVILGPDGPSLGGFVCPVTVIEADLWQIGQLKAGDK 749 G PSNI D Y +G++ G + P++L D S GG+ TVI ADL IGQL+ K Sbjct: 235 GSDPSNIVDACYPIGSIQIPGGLEPIVLLRDAVSGGGYATIGTVISADLDLIGQLQPNHK 294 Query: 750 VRFVPVDVAAA 760 +FV V + A Sbjct: 295 AQFVRVTLEQA 305 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,947,743 Number of extensions: 177453 Number of successful extensions: 604 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 583 Number of HSP's successfully gapped: 7 Length of query: 1207 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1111 Effective length of database: 1,165,310 Effective search space: 1294659410 Effective search space used: 1294659410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)