BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4342.p
         (571 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311783|ref|YP_003775875.1| dienelactone hydrolase [Herbasp...   125   1e-29
gi|300310280|ref|YP_003774372.1| dienelactone hydrolase [Herbasp...   109   5e-25

>gi|300311783|ref|YP_003775875.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 134/287 (46%), Gaps = 24/287 (8%)

Query: 283 LVADLLAGRTVA--DFIGSPTAQVAWREQVMRYAIPGE----DLHLEMTLLLPDGAGPFP 336
           +VA LL G  +    +   P    A RE+V+   IP       + LE TL  P G GPFP
Sbjct: 21  IVAVLLLGCLLQHPSWAAEPPLNKALREEVI--MIPSGTGIFSVKLETTLFRPPGEGPFP 78

Query: 337 VMIFSHGDVEMDSSSIRYKQRLRDMTVAAEFLRNGVAVAFPARRGVGMSEGLYQQSWSQA 396
           ++I +HG    + +   ++ R R + +A EF+R G AV  P R+G   S G+Y       
Sbjct: 79  LLIINHGKSPGNPA---FQPRGRSVVMATEFVRRGYAVLLPMRKGFSRSGGMYVDGGCNI 135

Query: 397 DGDALYAARRHAADVLPAIEMLRTLPQLDGSRMIIAGQSAGGYTTMYLASLNLPGVIGAI 456
            G+        A D+  A++  R    +D  R+II GQS GG TTM     N PGV   +
Sbjct: 136 RGNG----EAQADDLQAALDYARQQAWVDKDRVIIMGQSHGGLTTMAFGERNPPGVRALL 191

Query: 457 NFSGG-RND-NGGFGSSALIPTMIRGFGESGKTTRTPMLWIFAEQDSRYPVTTIKACHDA 514
           NF+GG R D  G    SAL    +  FG  G  TR P LW + E DS +        ++A
Sbjct: 192 NFAGGLRYDATGCIWKSAL----VDAFGVFGSRTRIPSLWFYGENDSYFNPELAARMYEA 247

Query: 515 FTAAGGRATLVIVPYNGHDGHFIYHYPAA---WRASLDTYLGQIGLP 558
           +T AGG ATLV       D H +         W    +  L Q+G+P
Sbjct: 248 YTKAGGPATLVAFGPFKSDAHGMSGSRDGIPIWWPPTEALLKQVGMP 294


>gi|300310280|ref|YP_003774372.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 123/264 (46%), Gaps = 31/264 (11%)

Query: 308 EQVMRYAIPGEDLHLEMTLLLPDGAGPFPVMIFSHGDVEMDSSSIRYKQRLRDMTVAAEF 367
           EQ MR  I  +D +            P P+++ +HG     +       R R    +  F
Sbjct: 60  EQKMRVTIWRDDAN----------PAPAPILVLNHGRAAEAAGRANLG-RARFTVASRFF 108

Query: 368 LRNGVAVAFPARRGVGMSEGLYQQSWSQADG--DALYAARRHAA--DVLPAIEMLRTLPQ 423
           +R G  VA P R G G++ G        A G     Y     AA    +  I  ++ LP 
Sbjct: 109 VRYGFVVAVPTRVGYGVTGG---DDLEDAGGCNSRFYPPVYEAAAQQTIATINAVKALPG 165

Query: 424 LDGSRMIIAGQSAGGYTTMYLASLNLPGVIGAINFSGGRNDNGGFGSSALIPTMIRG--- 480
            DG+R+++ GQS GG T + +AS  +PG+  AINF+GG     G G+    P    G   
Sbjct: 166 TDGARVVVVGQSFGGTTAITVASHQVPGLKAAINFAGG-----GGGNPKTHPQQPCGPQK 220

Query: 481 ----FGESGKTTRTPMLWIFAEQDSRYPVTTIKACHDAFTAAGGRATLVIVPYNGHDGHF 536
               FG+ GK+++ P LWI+ E D     T  +   +AF AAGG+   V+ P +G DGH 
Sbjct: 221 LEQMFGDYGKSSQVPTLWIYTENDQWMGPTYPRQWFNAFQAAGGKGEFVLFPPHGEDGHL 280

Query: 537 IY-HYPAAWRASLDTYLGQIGLPA 559
           ++  +P +W+  +  +L Q G  A
Sbjct: 281 LFARFPQSWQPRVAEFLEQQGFTA 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,978,168
Number of extensions: 91008
Number of successful extensions: 324
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 2
Length of query: 571
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 481
Effective length of database: 1,193,720
Effective search space: 574179320
Effective search space used: 574179320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)