BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4340.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313750|ref|YP_003777842.1| transmembrane protein [Herbaspi...   376   e-106
gi|300313686|ref|YP_003777778.1| transmembrane protein [Herbaspi...   140   6e-35

>gi|300313750|ref|YP_003777842.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  376 bits (966), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/233 (83%), Positives = 210/233 (90%), Gaps = 6/233 (2%)

Query: 1   MIGIAMTTSTAPSATS------SPIASAGERSTPATTVRHNWIDNLQGQLFGVVMIAFGM 54
           MIGIAM+TST  +A S      +P+A A  R   A+ VRH+WIDNLQGQ FGVVM+AFGM
Sbjct: 1   MIGIAMSTSTTSTAASSASRPIAPVAPAPVRGPAASPVRHSWIDNLQGQFFGVVMVAFGM 60

Query: 55  SMLHSLGLIIGQVAGVAFLVTYVTGMSFGMAFTLINLPFYLLAALRMGAAFTWRTLAAVT 114
           SMLHSLGLIIGQ+AGVAFLV+Y +G+SFG+AFTLINLPFYLLAALRMGAAFTWRTLAAVT
Sbjct: 61  SMLHSLGLIIGQIAGVAFLVSYGSGISFGLAFTLINLPFYLLAALRMGAAFTWRTLAAVT 120

Query: 115 AVSVLTNIAGNYISYRHLDPIVGAVLAGLCVGIGLIGLFRHQASCGGMSILASYVQERTG 174
           AVS+LTNIAGNYISYRHLDP VGAVLAGLCVGIGLI LFRHQASCGGMSILA+YVQERTG
Sbjct: 121 AVSLLTNIAGNYISYRHLDPAVGAVLAGLCVGIGLIALFRHQASCGGMSILAAYVQERTG 180

Query: 175 FKAGWLLMGFDLVLFATAAFFLPAERVLYSLVGAITMNLFVAWNHRYEWYIAR 227
           FKAGWLLMGFDL LFATAA+FLP ERVLYSL GAITMNLFVAWNHRYEWYIAR
Sbjct: 181 FKAGWLLMGFDLALFATAAWFLPMERVLYSLAGAITMNLFVAWNHRYEWYIAR 233


>gi|300313686|ref|YP_003777778.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  140 bits (354), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 118/193 (61%)

Query: 33  RHNWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQVAGVAFLVTYVTGMSFGMAFTLINLP 92
           RH   +++   + G + I+ G++M   +GL+ G  AG+AFL  Y+TG+ FG  F  INLP
Sbjct: 16  RHRSYEDVLALVAGTLFISLGVNMYTQVGLLTGSTAGLAFLAHYLTGLPFGAVFFTINLP 75

Query: 93  FYLLAALRMGAAFTWRTLAAVTAVSVLTNIAGNYISYRHLDPIVGAVLAGLCVGIGLIGL 152
           FY  A  RMG  F  +T  AV  VS  + +   +ISY  LD    AVL GL +G+G + L
Sbjct: 76  FYYFAWRRMGKRFMLKTFCAVALVSGFSLMHPYFISYGKLDLFYSAVLGGLLIGVGFVML 135

Query: 153 FRHQASCGGMSILASYVQERTGFKAGWLLMGFDLVLFATAAFFLPAERVLYSLVGAITMN 212
           FRH AS GG++++  ++Q+R G +AG L MG D+V+   + + +  + +L S++GA+T N
Sbjct: 136 FRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLWVVAPKVLLASILGAVTAN 195

Query: 213 LFVAWNHRYEWYI 225
           L +A NHR   Y+
Sbjct: 196 LIIALNHRAGRYM 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 694,470
Number of extensions: 29485
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)