BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4338.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance ...   711   0.0  

>gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance
           cation efflux system outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/428 (84%), Positives = 389/428 (90%)

Query: 1   MYRHSFLLGLALLAAGSSQAQSIAPSTTQYNPPSTASALDKETRLLSLPAAISLAFEQNK 60
           MYRHS LL L LLAAG S AQ  AP+ T++  P TAS+L  E RLLSLPAAISLA EQNK
Sbjct: 1   MYRHSILLALGLLAAGVSHAQDTAPANTEHPQPHTASSLASEPRLLSLPAAISLALEQNK 60

Query: 61  TLAAARKEIEAVEATILQAGARPNPEFSALLEDFRKSSRTTTYQITQPIELGGKRSARID 120
           TLAAARKEIEAVEATI+QAGARPNPEFSAL+EDFRKSSRTTTYQ+TQPIELGGKRSARI+
Sbjct: 61  TLAAARKEIEAVEATIIQAGARPNPEFSALMEDFRKSSRTTTYQLTQPIELGGKRSARIE 120

Query: 121 AAQRARDMALLDYAVKRTEIRAGVVAAYYDVMVAAERQRLASELLGLANTSAQMTGRRVM 180
           AAQR R+MALLDYA KRTEIRAGV+AAYY+VMVA ERQRLA ELLGLA TSA MT RRV 
Sbjct: 121 AAQRTREMALLDYAAKRTEIRAGVIAAYYEVMVAMERQRLAKELLGLAKTSADMTSRRVT 180

Query: 181 AGKISPVEQTKAQVAQSSARLELNEANSDLTVAQKKLATFWGSVGNGFELTDHGVESLPP 240
           AGKISPVEQTKA+VA+SSA+LEL++A+SD+ +AQKKLATFWGSVGN F+LTD GVESLP 
Sbjct: 181 AGKISPVEQTKARVAESSAQLELHQADSDVLLAQKKLATFWGSVGNAFQLTDGGVESLPA 240

Query: 241 LPAIAQLTEKVASGPTVRLAQLEVERRRALASIETSKRTPDVSLTLGNKRDESNARNMWV 300
           LP+IAQLTEKVA+GP V+LAQLEVERRRALA IETSKRTPDV+L+ GNKRDESNARNMWV
Sbjct: 241 LPSIAQLTEKVAAGPAVQLAQLEVERRRALARIETSKRTPDVTLSFGNKRDESNARNMWV 300

Query: 301 VGFSVPIPVFDSNKGNELEALKRVDIARDTLSVIEVQMQSEAAQSFERLRNAREEATALR 360
           VGFSVPIPV DSNKGNELEALKRVDIARD LS++EVQMQSEAAQSFERLRNAREEA ALR
Sbjct: 301 VGFSVPIPVLDSNKGNELEALKRVDIARDELSIVEVQMQSEAAQSFERLRNAREEAVALR 360

Query: 361 DEIVPAAQSAYQAARTGFELGKFGYLDVLDAQRTYFQAKAQYWKALSTAFQAAADLDRLA 420
           +EIVP AQSAYQAARTGFELGKF YLDVLDAQRTYFQAKAQYWKALSTAFQAAADLDRLA
Sbjct: 361 NEIVPGAQSAYQAARTGFELGKFAYLDVLDAQRTYFQAKAQYWKALSTAFQAAADLDRLA 420

Query: 421 GIETSPAE 428
           G ET   E
Sbjct: 421 GNETPSTE 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.126    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,053,395
Number of extensions: 37739
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 6
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)