BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4337.p
         (404 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313717|ref|YP_003777809.1| cobalt-zinc-cadmium resistance ...   617   e-178
gi|300313899|ref|YP_003777991.1| RND family efflux transporter M...    55   7e-09

>gi|300313717|ref|YP_003777809.1| cobalt-zinc-cadmium resistance
           cation efflux system transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  617 bits (1590), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/386 (79%), Positives = 340/386 (88%), Gaps = 17/386 (4%)

Query: 36  KPSAHQEEGGHQDNEHPGEDQDSDHK-----------------EEGKIALDQEQMAAAAI 78
           K  AHQEEGGH+DNEH GE++ S+HK                 EEGKIAL+ EQ+A A I
Sbjct: 11  KSPAHQEEGGHKDNEHHGEEKGSEHKDAAEHGEGEHHDAEPSSEEGKIALNPEQIATAGI 70

Query: 79  ELKTAGAMQITSSLQLPGEIRFNEDRTAHVVPQVAGIVESVSATLGQKVKKGQVLAVINS 138
           E+KTAG M + SS+QLPGEIRFNEDRTAHVVPQVAGIVESVSA LGQKV+KGQVLAVINS
Sbjct: 71  EVKTAGPMILNSSVQLPGEIRFNEDRTAHVVPQVAGIVESVSAKLGQKVRKGQVLAVINS 130

Query: 139 SAISELRSELLNAEQRLSLARTAYQREKKLWEQKISAEQDYLQAQSALREAEVAVRNAQQ 198
           SA+SE RSE+LNAEQRL+LARTAYQREK+LWEQKISAEQDYLQAQ+ALREAEVAVRNAQQ
Sbjct: 131 SAVSEQRSEMLNAEQRLALARTAYQREKQLWEQKISAEQDYLQAQAALREAEVAVRNAQQ 190

Query: 199 KLRAIGASGSSGSLNRYEIRAPFDGTVVEKHLGLGEAVREDANAFLISDLSSVWAEIIVS 258
           KLRAIGA+ SSG LNRYEIRAPFDG VVEKHLGLGEAV+EDANAFLISDLSSVWAEIIVS
Sbjct: 191 KLRAIGATASSGGLNRYEIRAPFDGVVVEKHLGLGEAVKEDANAFLISDLSSVWAEIIVS 250

Query: 259 PKDMQVVRVGEKVVVQATALSASAQGNISYVGSLIGEQSRTAKAHVVLPNTGEIWRPGLF 318
           PKDMQ VR GEKV V+ATA  ASA G ISYVGSLIGEQSRTAKAHV+LPN  + WRPGLF
Sbjct: 251 PKDMQFVRTGEKVTVRATAFDASASGKISYVGSLIGEQSRTAKAHVILPNPDDSWRPGLF 310

Query: 319 VNVEVVSDEAQVPVAVAADAIQTVDGKNVVFVRVPGGFAAQEVTLGRASGKFVEIKSGID 378
           VNVEVVSDEAQVPVAV+A+A+QTV+ K+V+FVRVPGGFAAQ+V  GR++GKFVEI+SG++
Sbjct: 311 VNVEVVSDEAQVPVAVSAEALQTVEEKSVIFVRVPGGFAAQQVVTGRSNGKFVEIRSGLN 370

Query: 379 AGTEYAATGSFAIKAELGKGSAEHSH 404
           AG EYAATGSFAIKAELGKGSAEHSH
Sbjct: 371 AGDEYAATGSFAIKAELGKGSAEHSH 396


>gi|300313899|ref|YP_003777991.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 127/276 (46%), Gaps = 22/276 (7%)

Query: 114 GIVESVSATLGQKVKKGQVLAVINSSAISELRSELLNAEQR----LSLARTAYQREKKLW 169
           G ++  +  +G +VKKG++LA +++  I +  ++ L A ++    + LAR++  R + L 
Sbjct: 104 GYLKRWTKDIGAEVKKGELLAELDTPEIDQQLTQALAAREQAASSMELARSSMARWEALR 163

Query: 170 EQKISAEQDYLQAQSALREAEVAVRNAQQKLRAIGASGSSGSLNRYE----IRAPFDGTV 225
           ++   ++Q+  + +SA  +A   +  A   +         G L + E    I APF G +
Sbjct: 164 KKDAVSQQELDERRSAFAQASANLAAADANV---------GRLRQVEGFKRIVAPFSGII 214

Query: 226 VEKHLGLGEAVREDAN--AFLISDLSSVWAEIIVSPKDMQVVRVGEKVVVQATALSASA- 282
             +++ +G+ +   A    F++S    +   + V      +V+ G++V V  + L     
Sbjct: 215 TRRNVDVGDLIDPGAGRALFVLSQTDPLRVYVNVPQSYANLVKPGQQVTVTQSELRGRKF 274

Query: 283 QGNISYVGSLIGEQSRTAKAHVVLPNTGEIWRPGLFVNVEVVSDEAQVPVAVAADAIQ-T 341
           +G ++     I   +R+ +  V L N      PG FV V +    +   + VAAD +   
Sbjct: 275 EGKVARTAGAIDAATRSMQVEVTLSNADHALLPGAFVQVALPIKPSGA-LLVAADTLMFR 333

Query: 342 VDGKNVVFVRVPGGFAAQEVTLGRASGKFVEIKSGI 377
            DG  V  V        +++ LGR  G+ VE+  G+
Sbjct: 334 RDGTLVAAVDPHNQVRLKKLRLGRNFGQTVEVLDGL 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.127    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,155,553
Number of extensions: 46211
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 8
Length of query: 404
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,207,925
Effective search space: 382912225
Effective search space used: 382912225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 132 (55.5 bits)