BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4336.p (1067 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance ... 1958 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 278 2e-75 gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump pr... 272 1e-73 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 268 1e-72 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 252 1e-67 >gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance cation efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1073 Score = 1958 bits (5073), Expect = 0.0, Method: Compositional matrix adjust. Identities = 976/1064 (91%), Positives = 1023/1064 (96%) Query: 1 MFERIIRFAIEHRWLVLLAVLGMGAYGLYSYQKLPIDAVPDITNVQVQINTAAPGYSPLE 60 MFERIIRFAIEHRWLVLLAVLGMGAYG+YSYQKLPIDAVPDITNVQVQINT+APGYSPLE Sbjct: 1 MFERIIRFAIEHRWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTSAPGYSPLE 60 Query: 61 TEQRISYPIETVMSGLPHLEQVRSLSRYGLSQVTVIFQDGTDIYFARQLVNERIQQARSQ 120 EQRISYPIET+MSGLP+LEQVRSLSRYGLSQVTVIF+DGTDIYFARQLVNERIQ ARSQ Sbjct: 61 AEQRISYPIETLMSGLPNLEQVRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQLARSQ 120 Query: 121 LPPGIDPGMGPISTGLGEIYLWTVEAKDDARKADGTPYTPTDLREIQDWVIKPQLRLVPG 180 LPPGIDPGMGPISTGLGEIYLWTVE++DDARK DGTPYT TDLREIQDWVIKPQLRLVPG Sbjct: 121 LPPGIDPGMGPISTGLGEIYLWTVESRDDARKPDGTPYTATDLREIQDWVIKPQLRLVPG 180 Query: 181 VTEINTIGGFAKEYLVAPSPEKLASYGMTMDTVIKALEKNNNNVGAGYIERRGEQYLIRA 240 VTEINTIGGFAKEYLVAPS EKLASYGMTMDT+IKALEKNN+NVGAGYIERRGEQYLIRA Sbjct: 181 VTEINTIGGFAKEYLVAPSAEKLASYGMTMDTIIKALEKNNSNVGAGYIERRGEQYLIRA 240 Query: 241 PGQVGSTEDIGNIVLANVKGVPIRVRDVAQVDIGRELRTGAATENGREVVLGTVFMLIGE 300 PGQV S +DIGNIVLANVKGVPIR+RDVA+V+IGRELRTGAATENGREVVLGTVFMLIGE Sbjct: 241 PGQVASIDDIGNIVLANVKGVPIRIRDVAEVEIGRELRTGAATENGREVVLGTVFMLIGE 300 Query: 301 NSRKVSQAVDKKMREINRTLPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFV 360 NSRKVSQAV +KM EINR+LPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFV Sbjct: 301 NSRKVSQAVARKMEEINRSLPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFV 360 Query: 361 FLGNIRAAIITATVIPLAMLFTFTGMVTNKVSANLLSLGALDFGIIIDGAVVIVENCVRR 420 FLGNIRAAIITA VIPLAMLFTFTGMV+NKVSANLLSLGALDFGIIIDGAVVIVENCVRR Sbjct: 361 FLGNIRAAIITAMVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIIIDGAVVIVENCVRR 420 Query: 421 LAHAQQHHGRTLSRSERFHEVFAAAKEARRPLLFGQLIIMIVYLPMFALTGVEGKMFTPM 480 LAHAQ HHGRTL+RSERFHEVFAAAKEARRPL+FGQLIIMIVYLPMFALTGVEGKMFTPM Sbjct: 421 LAHAQAHHGRTLTRSERFHEVFAAAKEARRPLIFGQLIIMIVYLPMFALTGVEGKMFTPM 480 Query: 481 AFTVVAALMGAMILSVTFIPAAIALFIGEKVAEKENFMMVWAKRMYEPMLKRIMDNKAVV 540 AFTVVAAL+GAMILSVTFIPAAIALFIGEKVAEKEN +M+WAKR+YEPMLK IM+NK VV Sbjct: 481 AFTVVAALIGAMILSVTFIPAAIALFIGEKVAEKENILMLWAKRLYEPMLKTIMENKPVV 540 Query: 541 LTFAGALIVVCGAVATRLGTEFVPSLNEGDMAIQALRIPGTSLSQSLEMQKQLEKTLKQK 600 LTFAGALI+VCG VA+RLG+EFVPSLNEGDMAIQALRIPGTSLSQSLEMQKQ+EKTLKQK Sbjct: 541 LTFAGALILVCGVVASRLGSEFVPSLNEGDMAIQALRIPGTSLSQSLEMQKQIEKTLKQK 600 Query: 601 FPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWPKPRKTHEELLAAIQAEVAKIP 660 FPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWP+P+K+ EELL AIQ EVAKIP Sbjct: 601 FPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWPEPKKSREELLEAIQDEVAKIP 660 Query: 661 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMDVLNETAGKISAVLEKIPGATEVKIE 720 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDM VLN+TA KISAVLEKIPGATEVKIE Sbjct: 661 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNDTASKISAVLEKIPGATEVKIE 720 Query: 721 QTTGLPMLTVDIDHQKTARYGLNVSDIQDTIATAIGGKHAGTLFQGDRRFGIVVRLPDDA 780 QTTGLPMLTV+ID +KTARYGLNVSDIQDT+ATAIGGK AGT+FQGDRRFGIVVRLPD A Sbjct: 721 QTTGLPMLTVEIDREKTARYGLNVSDIQDTVATAIGGKEAGTMFQGDRRFGIVVRLPDQA 780 Query: 781 RTDLEAIRRLPLALPLQEGAARTSYIPLSEVATLNIAPVPNQISREDGKRRIVVSANVRG 840 RTDLEAIRRLP+ALP QEGA R SY+PL EVA+L IAP PNQISREDGKRRIVVSANVRG Sbjct: 781 RTDLEAIRRLPIALPPQEGATRVSYVPLGEVASLTIAPGPNQISREDGKRRIVVSANVRG 840 Query: 841 RDLGGFVADAERQLQSEVKIPSGYWTTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAM 900 RDLGGFVA+AERQLQS VK+P+GYWTTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAM Sbjct: 841 RDLGGFVAEAERQLQSAVKVPAGYWTTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAM 900 Query: 901 FGNVKDGMLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGLVMISFIRS 960 F NVKDG+LVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGLVMISFIRS Sbjct: 901 FSNVKDGLLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGLVMISFIRS 960 Query: 961 LREEGRSLDDAIDEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIL 1020 LREEGR+LD AI EGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIL Sbjct: 961 LREEGRTLDAAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIL 1020 Query: 1021 SSTALTLLVLPLLYKVAHDKDEGEAPAVQGAGPAFWKFWSKRSS 1064 SSTALTLLVLPLLYK+AHDKDE + PA + P FWKFW K+SS Sbjct: 1021 SSTALTLLVLPLLYKLAHDKDEEDNPAGPPSRPPFWKFWVKQSS 1064 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 278 bits (710), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 276/1060 (26%), Positives = 487/1060 (45%), Gaps = 71/1060 (6%) Query: 7 RFAIEH---RWLVLLAVLGMGAYGLYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQ 63 RF I+ W++ + ++ +G G+ S + L ++ PDI +V I G S E Sbjct: 3 RFFIDRPIFAWVIAIIIM-LG--GMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLED 59 Query: 64 RISYPIETVMSGLPHLEQVRSLSRYGLS-QVTVIFQDGTDIYFARQLVNERIQQARSQLP 122 ++ IE M GL +L+ + + S S V++ F GT+ A+ V ++QQ ++LP Sbjct: 60 SVTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLP 119 Query: 123 PGIDPGMGPISTGLGEIYLWTVEAKDDARKADGTPYTPTDLREIQDWVIKPQLRLVPGVT 182 + ++ +I + DD R T D+ + + Q+ V GV Sbjct: 120 QAVQNNGVTVTKASTDILMVLSLTSDDPR------ITSIDIGDFISSTLTDQISRVEGVG 173 Query: 183 EINTIG-GFAKEYLVAPSPEKLASYGMTMDTVIKALEKNNNNVGAGYI----ERRGEQY- 236 ++ G +A + P KL Y + + AL+ N V AG I + G+Q Sbjct: 174 DVTAFGTNYAMRIWI--DPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQIN 231 Query: 237 -LIRAPGQVGSTEDIGNIVL-ANVKGVPIRVRDVAQVDIGRELRTGAATENGREVVLGTV 294 I A ++ + ++ NI++ ++V G +++ DVA+V++G E A+ +NG+ + Sbjct: 232 ATITARSKLTTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAI 291 Query: 295 FMLIGENSRKVSQAVDKKMREINRTLPKGVEAVT--VYDRTVLVDKAIATVKKNLVEGAL 352 + G N+ + AV KK+ E+ P ++ T YD T V ++ V K L+E + Sbjct: 292 QLATGANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIV 351 Query: 353 LVVAVLFVFLGNIRAAIITATVIPLAMLFTFTGMVTNKVSANLLSLGA--LDFGIIIDGA 410 LVV ++++FL NIRA I A +P+ +L TF + S N L++ L G+++D A Sbjct: 352 LVVLIMYLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDA 411 Query: 411 VVIVENCVRRLAHAQQHHGRTLSRSERFHEVFAAAKEARRPLLFGQLIIMIVYLPMFALT 470 +V+VEN V RL ++ + +R + E+ A L+ +++ V++PM Sbjct: 412 IVVVEN-VERLMSEEKLSPKEATR-KSMQEITGA-------LVGIAMVLSAVFIPMAFFG 462 Query: 471 GVEGKMFTPMAFTVVAALMGAMILSVTFIPAAIALFI----GEKVAEKENFMMVWAKRMY 526 G G ++ + T+V+A+ ++++++T PA A + G V + F W R + Sbjct: 463 GSTGVIYRQFSITIVSAMALSVMVALTLTPALCATLLKPHAGGHVQQGRFF--TWFNRSF 520 Query: 527 EPMLKRIMDNKAVVLT------FAGALIVVCGAVA-TRLGTEFVPSLNEGDMAIQALRIP 579 + R A +L ALI V AV RL T F+P ++G + Q Sbjct: 521 DRSATRYQGGVAGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPT 580 Query: 580 GTSLSQSLEMQKQLEKTLKQKFPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWP 639 G + Q+ + K +++ K VE V A G A V + N + +I LK EQ Sbjct: 581 GATAEQTATVVKTVQEYFMNKPESVESVLAIVG-AGVGGNSQ--NGARAFIRLKDWEQRT 637 Query: 640 KPRKTHEELLAAIQAEVAKIPGNSYEFSQPIQLRFNELISGVRSDVAVK-VFGDDMDVLN 698 ++ EL+ A+++KI G P +R SG D+ +K V G D L Sbjct: 638 GAGQSASELVRRANADLSKIRGARVFLMNPPAVRGLGQSSGF--DLELKDVGGVGHDALL 695 Query: 699 ETAGKISAVLEKIPGATEVKIEQTTGL---PMLTVDIDHQKTARYGLNVSDIQDTIATAI 755 + + + V+ TTGL P L V ID +K + SDI T+ATA+ Sbjct: 696 QARDQFLQLARSNALLANVR---TTGLDDTPQLRVAIDDRKADALSIATSDINATLATAM 752 Query: 756 GGKHAGTLFQGDRRFGIVVRLPDDARTDLEAIRRLPLALPLQEGAARTSYIPLSEVATLN 815 GG + R + V+ R + + R + A + +P + + Sbjct: 753 GGTYVNDFLSNGRVKKVYVQGDSAFRMQADDLNRWYVR------NAASQMVPFAAFMSSQ 806 Query: 816 IAPVPNQISREDGKRRI-VVSANVRGRDLGGFVADAERQLQSEVKIPSGYWTTWGGQFEN 874 P+ + R +G +V G G +A+ E+ + ++P+G W G Sbjct: 807 WTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEVEKLV---AQLPAGIGFEWTGSSYQ 863 Query: 875 LQSATQRLQIVIPVALLMVFVLLFAMFGNVKDGMLVFTGIPFALTGGILALAMRGIPMSI 934 + + + ++ +++L VF+ L A++ + V +P + G +L + G+ + Sbjct: 864 ERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGIFGMSNDV 923 Query: 935 SAAVGFIALSGVAVLNGLVMISFIRSLREEGRSLDDAIDEGAMTRLRPVLMTALVASLGF 994 VG + G++ N ++++ F + L E G+SL +A E RLRP+LMT+L G Sbjct: 924 YFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEATLEAVQLRLRPILMTSLAFMFGV 983 Query: 995 VPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPLLY 1034 +P+A+A+G G+ +R + T V+GG+LS+T L + +PL Y Sbjct: 984 LPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLFY 1023 >gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1063 Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 274/1048 (26%), Positives = 486/1048 (46%), Gaps = 69/1048 (6%) Query: 30 SYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRISYPIE----TVMSGLPHLEQVRSL 85 + + + D P+I V I G S E QRI+ E TV+S + H+E S Sbjct: 28 TLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQRIAAQNERGLTTVVSDIEHIE---SQ 84 Query: 86 SRYGLSQVTVIFQDGTDIYFARQLVNERIQQARSQLPPGIDPGMGPISTGLGEIYLWTVE 145 S G+S + V FQ +I A V +Q QLPPGI P + + ++ Sbjct: 85 SLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQLPPGITPPL---------VIKYSAS 135 Query: 146 AKDDARKADGTPYTPTD-LREIQDWVIKPQLRLVPGVTEINTIGGFAKEYLVAPSPEKLA 204 + + A +P P + + ++PQL +PGV GG ++ V + L Sbjct: 136 SIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYGGKSRLISVDLDTQALQ 195 Query: 205 SYGMTMDTVIKALEKNNNNVGAGYIERRGEQYLIRAPGQVGSTEDIGNIVLANVKGVPIR 264 + G+ V+ A+ N + +G + +Y ++ G + + + + G I Sbjct: 196 ARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAGLNELPVRTTNGATIY 255 Query: 265 VRDVAQVDIGRELRTGAATENGREVVLGTVFMLIGENSRKVSQAVDKKMREINRTLPKGV 324 ++DVA V G +T ++G VL ++ G ++ + + K + +TLP+ + Sbjct: 256 LKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNLRKLLPTAAQTLPEDI 315 Query: 325 EAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFVFLGNIRAAIITATVIPLAMLFTFT 384 + ++D++V V A+ V + A L A++ +FLGN R+ +I IPL+++ Sbjct: 316 KITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTLIIGLTIPLSIMAAIL 375 Query: 385 GMVTNKVSANLLSLG--ALDFGIIIDGAVVIVENCVRRLAHAQQHHGRTLSRSERFHEVF 442 + + NL++LG AL GI++D A+V +EN R L H G+ L + + Sbjct: 376 ILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHL-----HLGKPLHDA-----II 425 Query: 443 AAAKEARRPLLFGQLIIMIVYLPMFALTGVEGKMFTPMAFTVVAALMGAMILSVTFIPAA 502 A E P L I IV++PMF L+GV +F P+A VV A+ + +LS T +P Sbjct: 426 VGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRTLVPTL 485 Query: 503 IALFIGE--KVAEKENFMMVWAKRMYEPMLKRIMDNKAVVLT--------FAGALIVVC- 551 + L +G +V + ++ R ++ +R+ +VL+ FA A + C Sbjct: 486 VMLLMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAFLGFCL 545 Query: 552 --GAVATRLGTEFVPSLNEGDMAIQALRIP-GTSLSQSLEMQKQLEKTLKQKFP--EVER 606 + LG +F P+++ G + + +R+P GT + ++ ++E+ ++ P E+E Sbjct: 546 LSCLLYPFLGRDFFPNVDGGQIRLH-MRMPTGTRIEETARAADEVERVIRTLIPASELET 604 Query: 607 VFARTGTAEVASDPMPPNIS-----DGYIMLKPQEQWPKPRKTHEELLAAIQAEVAK-IP 660 + G + N DG I++ +E + E L++ ++AE+ + P Sbjct: 605 ILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEG----HRPTEALVSMLRAELPRRFP 660 Query: 661 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMDVLNETAGKISAVLEKIPGATEVKIE 720 G + F QP + L G+ + + V+ G +M+ A +++ + +IPGA + + Sbjct: 661 GIEF-FFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIRQIPGAVDAHVH 719 Query: 721 QTTGLPMLTVDIDHQKTARYGLNVSDIQDTIATAIGGK-HAGTLFQGDRRFGIV----VR 775 Q P L + +D + ++GL+ S++ + A+ G F + G+V V+ Sbjct: 720 QRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQ 779 Query: 776 LPDDARTDLEAIRRLPLALPLQEGAARTSYIP--LSEVATLNIAPVPNQISREDGKRRIV 833 P L+A+ L +P+ GA ++ P L + ++ SR + I Sbjct: 780 SPQYQVDSLDAL----LNIPVSPGANASTTPPQLLGNLVDVHAGRQMAVASRYNIAPAID 835 Query: 834 VSANVRGRDLGGFVADAERQL-QSEVKIPSGYWTTWGGQFENLQSATQRLQIVIPVALLM 892 V +V+G DL + Q + K+ G GQ E +QS+ L + + +A+++ Sbjct: 836 VYVSVQGTDLASVAGKVSALVEQIKPKLARGSQVVIRGQVETMQSSFTGLGVGLAMAIVL 895 Query: 893 VFVLLFAMFGNVKDGMLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGL 952 V++L+ F + D ++ +P AL G L + G +S+ A G I GVA N + Sbjct: 896 VYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSI 955 Query: 953 VMISFIRSLREEGRSLDDAIDEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLA 1012 ++++F R REEG + A E TR+RPVLMTAL +G +PMAL G GAE PL Sbjct: 956 LIVAFARQRREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLG 1015 Query: 1013 TVVIGGILSSTALTLLVLPLLYKVAHDK 1040 VIGG++ +T TL +P+++ H + Sbjct: 1016 RAVIGGLMLATVSTLFFVPVVFAGVHQR 1043 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 268 bits (686), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 269/1069 (25%), Positives = 487/1069 (45%), Gaps = 94/1069 (8%) Query: 7 RFAIEHRWLVLLAVLGMGAYGLYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRIS 66 RF I+ + L + +G+ + +LPI P + V IN PG +P + Sbjct: 3 RFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVI 62 Query: 67 YPIETVMSGLPHLEQVRSLS-RYGLSQVTVIFQDGTDIYFARQLVNERIQQARSQLPPGI 125 IE +SG+ +L S + G +Q++V F+ GTD A+ V +++ ++LP + Sbjct: 63 SLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTV 122 Query: 126 DPGMGPISTGLGEIYLWTVEAKDDARKADGTPYTPTDLREIQDWVIKPQLRLVPGVTEIN 185 + + L D R Y L + I +LR + GV + Sbjct: 123 RQNGVTVESAASSFLLMVSLTSVDGR------YDEVRLNDYLARNIVEELRRMEGVGRVQ 176 Query: 186 TIGGFAKEYLVAPSPEKLASYGMTMDTVIKALEKNNNNVGAGYI----ERRGEQYL--IR 239 G + + P KL +YG+T+ + A+ + N + G + RG+Q + Sbjct: 177 LFGA-EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLT 235 Query: 240 APGQVGSTEDIGNIVL-ANVKGVPIRVRDVAQVDIGRELRTGAATENGREVVLGTVFMLI 298 GQ+ S IVL A G + + DVA+V++G + A ENG+ + V + Sbjct: 236 VQGQLQSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSP 295 Query: 299 GENSRKVSQAVDKKMREINRTLPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVL 358 G N+ + + A+ +M E+ +LP+G+ Y+ V +I V + L+E +LV V+ Sbjct: 296 GANAVRTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVM 355 Query: 359 FVFLGNIRAAIITATVIPLAMLFTFTGMVTNKVSANLLSLGA--LDFGIIIDGAVVIVEN 416 ++FL N+R +I A V P+A+L T M S N+L++ L GII+D A+V+VEN Sbjct: 356 YLFLQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVEN 415 Query: 417 CVRRLAHAQQHHGRTLSRSERFHEVFAAAKEARRPLLFGQLIIMIVYLPMFALTGVEGKM 476 R +AH + G + + E+ A ++ L++ V++PM G G + Sbjct: 416 VERIMAH--EGLGPREATIKAMGEITGA-------IIGITLVLTAVFIPMALAGGSVGVI 466 Query: 477 FTPMAFTVVAALMGAMILSVTFIPAAIALFIGEKVA---EKENFMMVWAKRM------YE 527 + + + +++ + L+++ PA A + A +K F + + YE Sbjct: 467 YRQFSVAMAVSILFSAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYE 526 Query: 528 PMLKRIMDNKAVVLTFAGAL--IVVCGAVATRLGTEFVPSLNEGDMAIQALRIPGTSLSQ 585 L R++ ++ AL ++V G A L + F+P ++G + + ++P + ++ Sbjct: 527 SALGRLIARGLRMMLVYAALSGLLVVGMQA--LPSAFLPEEDQGYF-MTSFQLPADATTE 583 Query: 586 -SLEMQKQLEKTLKQKFPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWPKPRKT 644 + Q E+ LK + E + A PN + + LK W K RK Sbjct: 584 RTARAVDQFERYLKGR----EDIGANLSVLGFGFSGSGPNAAMAFTELK---DW-KERKG 635 Query: 645 H-----------------EELLAAIQAEVAKIPGNSYEFSQPIQLRFNELISGVRSDVAV 687 + ++ ++ + GNS F+ +Q R N+ A+ Sbjct: 636 STSAAEAMAAQAAMESGVDGMVMSLLPPAIEELGNSSGFAMRLQDRANQ------GYAAL 689 Query: 688 KVFGDDMDVLNETAGKISAVL-EKIPGATEVKIEQTTGLPMLTVDIDHQKTARYGLNVSD 746 K + L + K+S V + +P V++E ID K A G++ S Sbjct: 690 KAAEAQLLALAAKSRKLSGVYSDGLPAGASVQLE-----------IDRHKAAALGVSFSS 738 Query: 747 IQDTIATAIGGKHAGTLFQGDRRFGIVVRLPDDARTDLEAIRRLPLALPLQEGAARTSYI 806 I DT++ A+G + R ++++ AR LE + +L + Q G + Sbjct: 739 ISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDVMKL--YVRNQSGG----MV 792 Query: 807 PLSEVATLNIAPVPNQISREDGKRRIVVSANVR-GRDLGGFVADAERQLQSEVKIPSGYW 865 PL+E+ + P Q+ R G + +S + G G +A+ ER Q ++P G+ Sbjct: 793 PLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERLAQ---QLPPGFA 849 Query: 866 TTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAMFGNVKDGMLVFTGIPFALTGGILAL 925 W GQ + + + +++ +++L+VF++L A++ + + V +P L G + A+ Sbjct: 850 VAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVVPLGLVGAVAAV 909 Query: 926 AMRGIPMSISAAVGFIALSGVAVLNGLVMISFIRSLREEGRSLDDAIDEGAMTRLRPVLM 985 +R +P + VG I + G++ N ++++ F R LR EG L +A + ++ RLRP+LM Sbjct: 910 ILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEAAIKASVLRLRPILM 969 Query: 986 TALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPLLY 1034 T+L +LG VP+ LA+G AE QR + T V GG++S+T L +L +P+ + Sbjct: 970 TSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFF 1018 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 262/1043 (25%), Positives = 486/1043 (46%), Gaps = 70/1043 (6%) Query: 15 LVLLAVLGMGAYGLYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRISYPIETVMS 74 L++LA+L G+ +Y+ LP+ A+P++ +Q+ T PG SP ++ P+E Sbjct: 16 LLMLAIL---LVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSVTAPLERQFG 72 Query: 75 GLPHLEQVRSLSRYGLSQVTVIFQDGTDIYFARQLVNERIQQARSQLPPGIDPGMGPIST 134 +P L+Q+ S S G S +T+ F + A Q V I + LP D M P+ + Sbjct: 73 QMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPS--DLPMPPVYS 130 Query: 135 GLGEIYLWTVEAKDDARKADGTPYTPTDLREIQDWV---IKPQLRLVPGVTEINTIGGFA 191 V D L ++QD + I ++ + GV ++ GG Sbjct: 131 --------KVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGGQR 182 Query: 192 KEYLVAPSPEKLASYGMTMDTVIKALEKNNNNVGAGYIERRGEQYLIRAPGQVGSTEDIG 251 + +P +A+ G+ +D V A+ N N G + I A Q+ S ++ Sbjct: 183 PAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYR 242 Query: 252 NIVLANVKGVPIRVRDVAQVDIGRELRTGAATENGREVVLGTVFMLIGENSRKVSQAVDK 311 N+++A G PIRV DVA V G E A N + V+ + G N V ++ K Sbjct: 243 NLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSIKK 302 Query: 312 KMREINRTLPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFVFLGNIRAAIIT 371 + ++ +LP ++ + DRT + ++ VK L+ LVV V+FVFL N+ A II Sbjct: 303 ILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATIIP 362 Query: 372 ATVIPLAMLFTFTGMVTNKVSANLLSLGALDF--GIIIDGAVVIVENCVRRLAHAQQHHG 429 + +PL+++ TF M S N L+L AL G ++D A+V++EN R + + Sbjct: 363 SVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKPMQ 422 Query: 430 RTLSRSERFHEVFAAAKEARRPLLFGQLIIMIVYLPMFALTGVEGKMFTPMAFTVVAALM 489 L +E+ + L F + ++I P+ + V G++F A T+ +++ Sbjct: 423 AALKGAEQIGFTIIS-------LTFSLIAVLI---PLLFMGDVVGRLFHEFAVTLAVSIL 472 Query: 490 GAMILSVTFIPAAIALFIGEKVAEKENFMMVWAKRMYEP-------MLKRIMDNKAVVLT 542 + ++S+T P A + + E++ + +++ ++ ML+ ++ + + L Sbjct: 473 ISAVVSLTLTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLL 532 Query: 543 FAGALIVVCGAVATRLGTEFVPSLNEGDMAIQALRIPGTSLSQSL--EMQKQLEKTLKQK 600 A A + + + + F P + G IQ + S+S S E Q+QL K + Q Sbjct: 533 VAAATLGLTVLLYVFVPKGFFPLQDTG--VIQGISEATQSISFSAMGEKQQQLAKVVLQD 590 Query: 601 FPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWPKPRKTHE----ELLAAIQAEV 656 P VE + T+ + D ++ G +++ KP E +++ +Q ++ Sbjct: 591 -PAVESL-----TSFIGVDGTNATLNSGRMLIN-----LKPHDVREVSATDVIRRLQGKL 639 Query: 657 -AKIPGNSYEFSQPIQ-LRFNELISGVRSDVAVKVFGDDMDVLNETAGKISAVLEKIPGA 714 A++PG + + QP+Q L + +S R+ + D VL+ K+ A L++ Sbjct: 640 AAEVPGITL-YMQPVQDLTIEDSVS--RTQYQFTLEDADPAVLSTWVPKLIARLQQQSEL 696 Query: 715 TEVKIE-QTTGLPMLTVDIDHQKTARYGLNVSDIQDTIATAIGGKHAGTLFQGDRRFGIV 773 +V Q GL ++ID +R G+ + I + + A G + T++ ++ +V Sbjct: 697 ADVATNLQDQGL-QAYIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVV 755 Query: 774 VRLPDDARTDLEAIRRLPLALPLQEGAARTSYIPLSEVATLNIAPVPNQISREDGKRRIV 833 + + + + A+ + L + G + +PLS +AT+ P ++ Sbjct: 756 MEVKPEFQHGPAALDSIYL---VTSGGGK---VPLSSIATVTERTAPLVVNHIGQFPAAT 809 Query: 834 VSANV-RGRDLGGFVADAERQLQSEVKIPSGYWTTWGGQFENLQSATQRLQIVIPVALLM 892 VS N+ +G LG V A + + E+ +P+ T + G Q++ +I A++ Sbjct: 810 VSFNLAKGASLGEAV-KAIKAAEEEIGMPASTVTNFQGAALAFQASLSNTLWLILAAIVT 868 Query: 893 VFVLLFAMFGNVKDGMLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGL 952 ++++L ++ + + + + +P A G +L+L + G + I +G I L G+ N + Sbjct: 869 MYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAI 928 Query: 953 VMISF-IRSLREEGRSLDDAIDEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPL 1011 +MI F + + R EG+S +AI + + R RP+LMT + A LG +P+ L TG G+E+++PL Sbjct: 929 MMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPL 988 Query: 1012 ATVVIGGILSSTALTLLVLPLLY 1034 ++GG+L S LTL P++Y Sbjct: 989 GITMVGGLLVSQVLTLFTTPVIY 1011 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,110,616 Number of extensions: 129640 Number of successful extensions: 579 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 496 Number of HSP's successfully gapped: 13 Length of query: 1067 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 972 Effective length of database: 1,170,045 Effective search space: 1137283740 Effective search space used: 1137283740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)