BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4333.p (734 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 131 3e-31 gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 122 1e-28 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 120 5e-28 gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 117 3e-27 gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 116 8e-27 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 194/738 (26%), Positives = 299/738 (40%), Gaps = 86/738 (11%) Query: 27 SPTQNKSDAAPQEQAALPTVTVSGRSDTATTEGSGSYTTGTTAAATHLPLSLQETPQSVT 86 SP A Q+ ALP + VSG + Y T + T L++ PQ++ Sbjct: 19 SPLAILPACAQQDTTALPAIEVSG------ARANDGYVAPTAVSGTKSEAPLRDVPQTIN 72 Query: 87 VVTRQRMDDQQLNSVQGVLDNTPGISSYQSDSERTSFYSRGFLINNVQYDGIPTVVGNT- 145 VV Q + DQ +S+Q VL N PG+ D +R + RGF T +G+ Sbjct: 73 VVPAQVIRDQNASSLQDVLKNVPGLGLSTGDGQRDQVFIRGF-----------TAIGDQF 121 Query: 146 VNGSGISAI---DTSFYDRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQDFSASASLSAG 202 V+G A+ D S + VEV++G + +L G G+ IN V K+P D S S +A Sbjct: 122 VDGFRDDALYFRDLSNVESVEVIKGPAAVLYGRGSSGGLINRVTKKPGVDVS-DVSFTAN 180 Query: 203 SWDTHRATADISTPLTADGRIRARVVATDQEGHSYINGYKPEKKSFYGIVEADLSPRTTA 262 S RA D+ +G + R+ + G S+ ++ + V S T Sbjct: 181 STAGRRAELDLGR--AGEGALSWRLTGAVERGDSFRAQQFIDRTAIAPSVALRFSADTKL 238 Query: 263 SLGYDYQDLTSTGSTWGGLPLWFSNGTQASYSPSQSY----AQDWSHWDNTYKTAFAAID 318 L DY L G+P + G P +Y A+D + + A Sbjct: 239 LLQMDY--LEDRRMMDFGIPSY--RGRPVDVDPGTTYGARNARDADFVQSRVASTTATFT 294 Query: 319 HRFDNGWKLRAIANQYRTEYNAELL--GLVGRPDASTGLGFFPNGAYPVGLASNGSSRQN 376 HRF++ + R Y N G V A+T L N A V NG Q+ Sbjct: 295 HRFNDEFSFRNGLRYYDYHLNRNNTNGGTVNEATATTTL----NHAKLV-RDENGWFNQS 349 Query: 377 TFDVMASGPFELLGRQHELVVGATTSRRTSNQNDVAPFYAGFSPVNIYDLSTPFARPDFA 436 + +L +HE++ G ++ + + A F V+I++ P P+ Sbjct: 350 EL----TQKLQLGSIRHEILYGLELGSQSKDASQ-ASGVVNFPGVSIFNPVLPVVDPN-- 402 Query: 437 AMNWAPTRT--EIKQSGVYSAARFSLAQPLKLIVGGRLSNY----EIDDSVSGSAMHYKK 490 +N PT T Y SL++ K +VG R Y I + +GS ++ Sbjct: 403 RLN-PPTLTYGTYDTFATYLQDSLSLSEQWKALVGLRYDRYRQQSRILNLANGSTADLQR 461 Query: 491 -NSVFTPYAGLVYDINNIYSTYVSYTRIFNPQTD-YQDSKGNV-LTPATGKTTEIGLKGA 547 ++ +P AGLV+ + S Y+S++R F P + + + N L P + TE G K Sbjct: 462 TDTAVSPRAGLVWQPSLTQSYYLSWSRSFQPSGESFALATNNADLAPEQTRNTEAGAKYD 521 Query: 548 YLDGRLNASVAVFETKLDN-AAQIVAGAFTPSGAQAYTGVDGTKSRGIEVDLQGELTRDW 606 + +GR +A+V+VF + DN + + G P G Q ++ G E+ +L + W Sbjct: 522 FWEGRASATVSVFRLERDNIKSALPNGVVIPVGKQ--------RTDGAELSFSADLKQGW 573 Query: 607 NIYAGLSHFAA------QDGNGVRLNSQ----IPRTTAQLFTTYRLPGQWSKLTLGGGVK 656 + AG + A NGV + PR + L+ T L V Sbjct: 574 KLLAGYAWLNAVITESSSFDNGVPFKGKNATLTPRHSGNLWLTRELGEGLVVGGGANAVG 633 Query: 657 WQSRFYEAANTGTSTLGGEQGAYALASLMARYAVSTKTTVTVNVNNLFDKKYAL--QKGD 714 +RF N T TL G Y MA Y S K V +N+ NLF+ Y + + Sbjct: 634 --ARFANPGN--TVTLPG----YVTVDAMAAYRTS-KYEVQLNIGNLFNTGYIISGHGTN 684 Query: 715 FDTVTYGAPRNAMVTLAY 732 + GAPRN +TL Y Sbjct: 685 PNLSMPGAPRNVALTLRY 702 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 181/766 (23%), Positives = 303/766 (39%), Gaps = 119/766 (15%) Query: 7 SSAVAAAVLMSAQGAFAADSSPTQNKSDAAPQEQAALPTVTVSG-RSDTATTEGSGS--Y 63 S AVA+A+L+ GA A S + LP V G R +E S S Y Sbjct: 20 SLAVASALLLPVMGAHAQTSG-------------SGLPPTRVDGARESPYKSEYSASPKY 66 Query: 64 TTGTTAAATHLPLSLQETPQSVTVVTRQRMDDQQLNSVQGVLDNTPGISSY-----QSDS 118 T L +TPQ++ ++ R M Q S+ VL NTPG+ ++ S S Sbjct: 67 TQ-----------PLVDTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTS 115 Query: 119 ERTSFYSRGFLINNVQYDGIPTVVGNTVNGSGISAIDTSFYDRVEVVRGGSGLLTGTGNP 178 + Y RGF D + + V G + D ++VEV++G +G G G+P Sbjct: 116 TGDTIYMRGF-------DATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSP 168 Query: 179 SAAINLVRKRPTQDFSASASLSAGSWDTHRATADISTPLTADGRIRARVVATDQEG---- 234 + +INLV K+P + + S + GSW RAT D + L AD + R+ Q Sbjct: 169 TGSINLVTKQPELVDAVTVSATYGSWIQKRATLDWNRILDADRGLALRLNLMKQHSGVPG 228 Query: 235 ----HSYINGYKPEKKSFYGIVEADLSPRTTASLGYDY-----QDLTSTGSTWGGLP--- 282 H+ +G+ P +G+ T + ++Y ++ G + GLP Sbjct: 229 RHVVHNARDGFAPSLA--FGL-------NTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYS 279 Query: 283 ------LWFSNGTQASYSPSQSYAQDWSHWDNTYKTAFAAIDHRFDNGWKLRAIANQYRT 336 + SN + S S + D++ + T ++H F KL+ RT Sbjct: 280 TPDPNRPYISNAPKVSTSNFYGHVNDYNRVNTDMTT--LRVEHDFSPDLKLQNTTRYART 337 Query: 337 EYNAELLGLV--GRPDASTGLGFF---PNGAYPVGLASNGSSRQNTFDVMAS------GP 385 + + L V G + + F P ++ N +R++ + + S Sbjct: 338 DQDYRLSSFVAIGVKTDRSSVSLFTPSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTAS 397 Query: 386 FELLGRQHELVVGATTSRRTSNQNDVAPFYAGFS---PVNIYDLSTPFARPDFAAMNWAP 442 F+ QH LV G +R + A + G S N+Y + F Sbjct: 398 FQSGALQHTLVGGLELTRERQH----ALSFTGPSRRPRANLYQPNPEFDDSGTLISVNGR 453 Query: 443 TRTEIKQSGVYSAARFSLAQPLKLIVGGRLSNYE--IDDSV--SGSAMHYKKNSVFTPYA 498 + + +Y+ + L +G R Y DD+ +G +H K +F Sbjct: 454 NKGQTDTVSLYALDTLKFNERWSLSLGLREDFYRTSFDDTKPNAGGPLH-KSGGLFNAKV 512 Query: 499 GLVYDINNIYSTYVSYTRI--------FNPQTDYQDSKGNVLTPATGKTTEIGLKGAYLD 550 +V+ + S Y Y FN ++ P T EIG K LD Sbjct: 513 AVVFKPTSYSSLYALYASAQQPPGGANFNLSASRSNASHTDYAPQKTDTGEIGTKWELLD 572 Query: 551 GRLNASVAVFETKLDNAAQIVAGAFTPSGAQAYTGVDGTKSRGIEVDLQGELTRDWNIYA 610 +L A+ A++ T+++N ++ S Y ++G+E+ + G+L+ ++ A Sbjct: 573 RKLIATAALYRTEVNNEVEL------DSLTNTYFQTGKKITQGLELGVTGDLSPTVSLTA 626 Query: 611 GLSHFAAQDGNGVRLNSQ-------IPRTTAQLFTTYRLPGQWSKLTLGGGVKWQSRFYE 663 G SH +Q G +++ PR + + ++RLP TLGGG+++ Sbjct: 627 GYSHMQSQVSRGALVSATGENFLAYAPRRSFTSWVSWRLP---QGFTLGGGLRYSGGLLR 683 Query: 664 AANTGTSTLGGEQGAYALASLMARYAVSTKTTVTVNVNNLFDKKYA 709 +T + GAY +A +MA Y + + +NVNNLF+ Y Sbjct: 684 GRDTNAIGTPKDTGAYWVADVMASYVIHQHAEIQLNVNNLFNNSYV 729 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 165/630 (26%), Positives = 244/630 (38%), Gaps = 77/630 (12%) Query: 43 LPTVTVSGRSDTATTEGSGSYTTGTTAAATHLPLSLQETPQSVTVVTRQRMDDQQLNSVQ 102 LP V + ++TA +G Y TA+AT + E PQSV+VVTR MD + + S+ Sbjct: 31 LPQVEIKADAETANGPVNG-YVAKRTASATKTDTPVLEVPQSVSVVTRDEMDARGVTSLL 89 Query: 103 GVLDNTPGISSYQSDSERTSFYSRGFLINNVQYDGIPTVVGNTVNG-----SGISAIDTS 157 VL PG ++SE RG+ N++ V N +NG G T Sbjct: 90 DVLRYMPG-----ANSETHGVDPRGYEYFNLRGFINAQVTSNFLNGLRQIPGGFGQFRTE 144 Query: 158 FY--DRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQDFSASASLSAGSWDTHRATADIST 215 Y +R+EV+RG + G +P IN V K P D + GS++ + AD++ Sbjct: 145 TYGMERIEVLRGPGSVTFGQADPGGVINRVSKLPGMDIPNELGVDIGSFNRKQVVADLNG 204 Query: 216 PLTADGRIRARVVATDQEG---HSYINGYKPEKKSFYGIVEADLSPRTTASLGY--DYQD 270 T DG RVV + + + NG + FY P + SL DY + Sbjct: 205 H-TQDGEYLWRVVGLGLDSNNQYKFNNGQSGDNNRFYLAPSLTWRPSASTSLTLMADYMN 263 Query: 271 LTSTGSTWGGL-PLWFSNGTQASYSPSQSYAQDWSHWDNTYKTAFAAIDHRFDNGWKLRA 329 S S W + P T + D W Y+ +H+FDN W R Sbjct: 264 DRSGSSRWTAVRPGNVLTHTLIGDPNFDRQSND--QWSFGYQ-----FEHKFDNAWTFR- 315 Query: 330 IANQYRTEYNAELLGLVGRPDASTGLGFFPNGAYPVGLASNGSSRQNTF-DVMASGPFEL 388 Q + N + + P TG G S NT D G + Sbjct: 316 ---QNFRQANLKSVYAALNPGTLTG------SVLTRGTTVYNSQVDNTLVDNQLEGRLKW 366 Query: 389 LGRQHELVVGATTSR---RTSNQNDVAPFYAGFSPVNIYDLSTPFARPDFAAMNWAPTRT 445 +H ++ G SR R AP +PV Y ++ P A F + Sbjct: 367 GATEHTVLFGLDWSRMYDREVRYRGAAPSLNIDNPV--YGVTIPAATTLFGNL-----EE 419 Query: 446 EIKQSGVYSAARFSLAQPLKLIVGGRLSNYEIDDSVSGSAMHY-------KKNSVFTPYA 498 + Q+G+Y+ + Q L L +GGR D V +Y +S + Sbjct: 420 NMNQTGLYAQDQIKFDQRLTLTLGGRW------DKVKDETRNYFNRTTTRSDDSALSGRI 473 Query: 499 GLVYDINNIYSTYVSYTRIFNPQTDYQDSKGNVLTPATGKTTEIGLKGAYLDGRLNASVA 558 GL Y + + YVSY F PQT D G P + E+G+K DG+ + A Sbjct: 474 GLSYLVTRDIAPYVSYATSFLPQTG-SDFNGKPFDPTKARQAEVGIKYQPADGKTLFTAA 532 Query: 559 VFETKLDNAAQIVAGAFTPSGAQAYTGV--DGTKSRGIEVDLQGELTRDWNIYAGLSHFA 616 +FE N TP A V KSRG+E++ +GE+ + N+ A ++ Sbjct: 533 LFELTKTNVQ-------TPDPAHTNFNVLSGEIKSRGLELEAKGEIVKGLNLSASYTYTD 585 Query: 617 A---QDGNGVRLNSQ---IPRTTAQLFTTY 640 Q+ L Q +PR A ++ Y Sbjct: 586 VKNTQNNTASLLGKQPILVPRQAASVWADY 615 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 189/762 (24%), Positives = 311/762 (40%), Gaps = 85/762 (11%) Query: 3 RTVLSSAVAAAVLMSAQGAFAADSSPTQNKSDAAPQEQAALPTVTVSGRSDTATTEGSGS 62 R +L + A++ L ++ A ++P Q ++ AALPTV+V+ T S Sbjct: 9 RAILLAFSASSALFTSSSVLA-QTAPPQGADSSSTAASAALPTVSVTADGYT----DSKF 63 Query: 63 YTTGTTAAATHLPLSLQETPQSVTVVTRQRMDDQQLNSVQGVLDNTPGISSYQSDSER-T 121 T T + PLS ETPQS++VVTR MD QQ S+ L N G+ + Q Sbjct: 64 KATQTQVNKSSTPLS--ETPQSISVVTRAMMDSQQAVSLSDALKNVSGVVAQQYGRRGWD 121 Query: 122 SFYSRGFLINNVQY-DGIPTVVGNTVNGSGISAIDTSFYDRVEVVRGGSGLLTGTGNPSA 180 RG + ++ Y DG+ T + V A +VEV++G LL G P Sbjct: 122 DLIIRGQVASDSLYLDGLRTTASSRV------AEQLYGLQQVEVLKGPGSLLYGLVLPGG 175 Query: 181 AINLVRKRPTQDFSASASLSAGSWDTHRATADISTPLTADGRIRARVVATDQEGHSYING 240 +N+V KRP A+ ++ GS D +++T D++ L+ +G+ R+ + Sbjct: 176 LVNMVSKRPQGSDFANVDVTIGSHDLYQSTVDLNKSLSENGKQAFRINGLISNSDDATDH 235 Query: 241 YKPEKKSFYGIVEADLSPRTTASLGYDYQDLTSTGSTWGGLPLWFSNGTQASYSPSQSY- 299 + + + DL RT ++ YQ+ GLPL S AS ++S Sbjct: 236 VWFKNRYIAPSLSLDLGARTDFTILTSYQERNYVRQQ--GLPLSGSITPNASGPLARSLF 293 Query: 300 -----AQDWSHWDNTYKTAFAAIDHRFDNGWKLRAIANQYRTEYNAELLGLVGRPDASTG 354 A+ ++ N + + ++ HRFD+GW L + + +L+ + + TG Sbjct: 294 IGEPGARPYAA--NETRIGY-SLTHRFDDGWTLNNNLRYQQFTMSGQLISI----NNLTG 346 Query: 355 LGFFPNGAYPVGLASNGSSRQNTFDVMASGPFELLGRQHELVVGA--TTSRRTSNQNDVA 412 + + + T D F +HE+ +G SR Sbjct: 347 TSLTRS-----AMDQTFEGQTFTMDTNVQRSFATAWGKHEVTLGTDYMNSRELERT---- 397 Query: 413 PFYAGFSPV-NIYDLSTPFARPDFAAMNWAPTR----------TEIKQSGVYSAARFSLA 461 +P+ NIY+ P + A PT+ T ++ +G Y+ + SL Sbjct: 398 -LTCSVTPLSNIYN-------PSYGARVVCPTQLTSTNAKLNDTSVRDTGFYARDKISLG 449 Query: 462 QPLKLIVGGRLSNYEIDDSVSGSAMHYKK-NSVFTPYAGLVYDINNIYSTYVSYTRIFNP 520 + +L+ G R + + + H +S T A ++ ++ + Y+SY F P Sbjct: 450 ERWQLLAGVRQDRAATYTTSALTGSHSDNASSATTASAAIMVELWHGVRPYLSYATSFYP 509 Query: 521 QTDYQDSKGNVLTPATGKTTEIGLKGAYLDGRLNASVAVFETKLDNAAQIVAGAFTPSGA 580 + G++ P TGK E G+K +GR + + A+F+ + N P Sbjct: 510 NSG-TAFDGSIFKPETGKQWETGVKVDLDEGRTSINFALFDLRRRNVL-----VTDPDHT 563 Query: 581 QAYTGVDGTKSRGIEVDLQGELTRDWNIYAGLSHFAA--QDGNGVRLNS------QIPRT 632 + G +S+G E+ + +L ++ A S+ AA D G R + +PR Sbjct: 564 SYKMAIGGQRSQGGEISVTSDLRNGLSLNAAYSYTAAIVIDDGGQRSTTVGQWLDNVPRH 623 Query: 633 TAQLFTTYRLPGQWSKLTLGGGVKWQSRFYEAANTGTSTLGGEQGAYALASLMARYAVST 692 YR G+ S L GGV+ QS T TL G Y LA + Y Sbjct: 624 NFTTSARYRFSGELSGWELNGGVRGQSMM----RTNGYTLPG----YVLADIGVAYNAER 675 Query: 693 KTTVTVNVNNLFDKKYALQKGDFDTVTYGAPRNAMVTLAYKY 734 T +NV N+F+ +Y G V G R M+TL Y+Y Sbjct: 676 WRTA-LNVKNVFNTEY-YAGGLGKAVALGDDRTVMLTLGYRY 715 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 183/730 (25%), Positives = 296/730 (40%), Gaps = 91/730 (12%) Query: 43 LPTVTVSGRSDT-ATTEGSGSYTTGTTAAATHLPLSLQETPQSVTVVTRQRMDDQQLNSV 101 L +TVSGR D + Y +A AT L E QSV+VVTR M+ + NS+ Sbjct: 156 LGNITVSGRRDEPGAADPVEGYVALRSATATKTDTPLLELAQSVSVVTRAEMEARGANSI 215 Query: 102 QGVLDNTPGISSYQSDSERTSFYSRGFLINNVQYDGIPTVVGNTVNG-----SGISAIDT 156 VL PG +++E RG+ N++ N +NG SG T Sbjct: 216 LDVLRYMPG-----ANTETHGVDPRGYDYFNLRGFINAQTTSNYLNGLRQIPSGFGMFRT 270 Query: 157 SFY--DRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQDFSASASLSAGSWDTHRATADIS 214 Y +RVEV+RG + G +P +N V K + GS+ + AD+S Sbjct: 271 ETYGLERVEVLRGANSASFGQADPGGVVNRVSKLAGSGARNELMVDVGSFQRRQVAADLS 330 Query: 215 TPLTADGRIRARVVATDQEGHS---YINGYKPEKKSFYGIVEADLSPRTTASLGY--DYQ 269 L +GR++AR+V +G + Y NG + Y + P SL +Y Sbjct: 331 GDLDPEGRVQARLVGLLLDGDTQFRYANGRAGDNDRLYLAPSLKIRPSADTSLILLAEYL 390 Query: 270 DLTSTGSTWGGLPLWFSNGTQASY---SP--SQSYAQDWSH-WDNTYKTAFAAIDHRFDN 323 S W + ++G+Q P Q + WS W ++HR D Sbjct: 391 KDRSGSGRWTAV---RADGSQTHTLLGDPDFDQQRGEQWSLGW---------MLEHRLDA 438 Query: 324 GWKLRAIANQ--YRTEYNAELLGLVGRPDASTGLGFFPNGAYPVGLASNGSSRQNT-FDV 380 W LR Q R++Y A+ G F A + +NT D Sbjct: 439 TWTLRQHFRQAALRSQY------------AAVNPGSFNGSILSRSTAVYDTQVENTLLDN 486 Query: 381 MASGPFELLGRQHELVVG---ATTSRRTSNQNDVAPFYAGFSPVNIYDLSTPFARPDFAA 437 A + +H++++G + S R VAP +PV Y P A F Sbjct: 487 QALARVQWGQAEHQVLLGLDWSHMSAREQRYRGVAPSLDIDNPV--YTQPIPAATTRFGD 544 Query: 438 MNWAPTRTEIKQSGVYSAARFSLAQPLKLIVGGRLS-NYEIDDSVSGSAMHYKKNSVFTP 496 ++ + Q+G+Y+ + Q + L +G R + + + + +++ + + F+ Sbjct: 545 LD-----QTLVQTGLYAQDQIRY-QRIVLTLGARYDRSRDSTRNAANNSLQAAEENAFSG 598 Query: 497 YAGLVYDINNIYSTYVSYTRIFNPQTDYQDSKGNVLTPATGKTTEIGLKGAYLDGRLNAS 556 GL Y ++ + YVSY F PQ QD G AT + E G+K GR + Sbjct: 599 RVGLSYLVSPELAPYVSYGSSFLPQAG-QDVDGKPFKAATARQIEAGVKYQPGHGRAVYT 657 Query: 557 VAVFETKLDNA--AQIVAGAFTPSGAQAYTGVDGTKSRGIEVDLQGELTRDWNIYAGLSH 614 A+++ DNA + + F+ S Q +SRG+E++ +GEL N+ A ++ Sbjct: 658 AALYQLVKDNALGSDPLHANFSVSNGQ-------VRSRGVELEAKGELLPGLNVTAAYTY 710 Query: 615 F-------AAQDGNGVRLNSQIPRTTAQLFTTYRLP-GQWSKLTLGGGVKWQSRFYE-AA 665 AA + G + +PR A L+ Y + G + + +G G ++ R Y AA Sbjct: 711 AQVVNTQNAAPELIG-KTPILVPRQAASLWLDYTVQRGDLAGMGVGAGARYTGRNYATAA 769 Query: 666 NTGTSTLGGEQGAYALASLMARYAVSTKTTVTVNVNNLFDKKYALQKGDFDTVTYGAP-R 724 NT E A + M R NV+NL +++Y + + AP R Sbjct: 770 NT------VENAAQVILDAMVRID-RGPWRYAFNVSNLANRQYTSCLAEPTLTCFWAPER 822 Query: 725 NAMVTLAYKY 734 A+++ Y++ Sbjct: 823 TAVLSARYRW 832 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.129 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,231,785 Number of extensions: 95433 Number of successful extensions: 321 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 26 Length of query: 734 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 642 Effective length of database: 1,184,250 Effective search space: 760288500 Effective search space used: 760288500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)