BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4331.p (1030 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 525 e-149 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 478 e-136 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 474 e-134 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 472 e-134 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 448 e-126 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/1047 (32%), Positives = 554/1047 (52%), Gaps = 28/1047 (2%) Query: 5 DIFIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQGFVT 64 FI RP+ A V+++ I+L GA A+ LPV QYP + TI ++ PGAT + VT Sbjct: 3 KFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVT 62 Query: 65 TPISQSIATASGIEYLSSTTK-QGRSEIKARLVLNANADRTMTEILAKVQQVKYQLPAGV 123 + I Q + A G++Y+ S ++ G+ +I N D ++ ++++V+ +LPA V Sbjct: 63 SLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPAAV 122 Query: 124 TDPVISKSTEGGTAVQYIAFYSNTLSIPQVT--DFASRVAQPLLTSIPGVASADVFGGQA 181 T + + + +I S + V D+ SR + +PGV A +FG + Sbjct: 123 TQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTER 182 Query: 182 LAMRIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKS--SLTVTNISAATDLRGV-- 237 AMRIWIDP +L L+ +++AA++A N A G L + S I+A + G Sbjct: 183 -AMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLT 241 Query: 238 --DDFRQMVVKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPLE 295 + F ++++++ G VRL DVA +EVGGQ+Y+ G P+ F+ +Q +P N L Sbjct: 242 SPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALG 301 Query: 296 IVKRANALLPKIRAMAPPGLTVAPNYDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLGT 355 + + ++ P G+ YD ++FV SIEEV TL+EAI +V +V+FLFL Sbjct: 302 TATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQN 361 Query: 356 FRAVIIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHI- 414 R IIP + +P++L+GT A +L GFSIN+LT+ MVLAIG++VDDAIVVVEN+ R + Sbjct: 362 IRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMS 421 Query: 415 EEGLSPVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVS 474 EEGLSP A +I G +I +T+ L AV+ P+ GG GA++++F+ ++ S++ S Sbjct: 422 EEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFS 481 Query: 475 GVVALTLSPVMSSMLLSSRQGEGRLAKR-----IEHSMEALTAIYQRILAHTLAARGAVL 529 ++A TL+P + + +L + K+ + + YQ I+ L G + Sbjct: 482 VLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRYM 541 Query: 530 LVGAVVLAAIVVLFAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLFESIP 589 +V +++A + +L+ P EDQG II + P A T +QIE+ + P Sbjct: 542 IVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKDP 601 Query: 590 EFDSSFMNIG-DYAG-GQNMMIGGAILKDWSERKR--SATDIQSQIQAAGGAIDGETLTA 645 + + +G ++G GQN + LKDWS+R + SA I + A I + Sbjct: 602 AVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVFP 661 Query: 646 VQLPPLP--GSSGGLPVQMVLRSPDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSPQ 703 + PP+P G++ G ++ R+ L + +I A S + + + D+PQ Sbjct: 662 LNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAPQ 721 Query: 704 AHITIDNAKASQMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPEDI 763 + ID KA+ +G+ +I L+ +G +YVN F R VI Q R+ PED+ Sbjct: 722 LQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPEDL 781 Query: 764 GRFYVKASSGAMVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPGVSMGEAVAFLQS 823 Y + SSG MVP S + + QL ++N + + APG S GEA+A ++S Sbjct: 782 TNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEMES 841 Query: 824 --QPLPPGTSVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTVP 881 LPPG +W S + GN+ + +L+ +FLVLAA +ES PL +++ VP Sbjct: 842 FVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVVP 901 Query: 882 LAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDAIEK 941 L + GAL+ + L ++Y ++G++ ++GL +K+ IL++ FA +Q + I+A + Sbjct: 902 LGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQ-AQGKGLIEATLE 960 Query: 942 AAAVRMRPVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLPTIY 1001 A +R RP++MT+ A + G++PL A+GAGSAS+ +IG V+ GM+ T +F++P + Sbjct: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 Query: 1002 SFIAKDHRALAQSARARELATAEAPDV 1028 + K + S R R+ +P + Sbjct: 1021 VVVRKIFKG---SERQRKFDAEHSPKI 1044 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 478 bits (1231), Expect = e-136, Method: Compositional matrix adjust. Identities = 324/1026 (31%), Positives = 533/1026 (51%), Gaps = 29/1026 (2%) Query: 6 IFIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQGFVTT 65 FI RPI A V++++++L G +V LP+ QYP + I I+ PGA+ ++ VT Sbjct: 4 FFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDTVTQ 63 Query: 66 PISQSIATASGIEYLSSTTKQ-GRSEIKARLVLNANADRTMTEILAKVQQVKYQLPAGVT 124 I Q + + Y++ST++ G I N D ++ K+ LP+ V Sbjct: 64 IIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPSEVQ 123 Query: 125 DPVISKSTEGGTAVQYIAFYSN--TLSIPQVTDFASRVAQPLLTSIPGVASADVFGGQAL 182 I+ + + +AF S ++S ++D+ + Q ++ + GV +FG Q Sbjct: 124 QQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGSQ-Y 182 Query: 183 AMRIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKSSLTVTN------ISAATDLRG 236 AMRIW+DP +L ++GL+ ++ A++A N Q + GQL N I+A T LR Sbjct: 183 AMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRLRT 242 Query: 237 VDDFRQMVVKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPLEI 296 D F+ +V+++ G V+L DVA IE+G ++Y ++ +G PA +A++ N L+ Sbjct: 243 ADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANALDT 302 Query: 297 VKRANALLPKIRAMAPPGLTVAPNYDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLGTF 356 VK + + ++ P G+ V YD FV SIEEV TL+EA+ +V +V++LFL F Sbjct: 303 VKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQNF 362 Query: 357 RAVIIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHI-E 415 RA +IP + +P+ L+GT ++ GF+IN LT+ AMVLAIGL+VDDAIVVVEN+ R + E Sbjct: 363 RATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVMSE 422 Query: 416 EGLSPVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVSG 475 EGL P +A +I G ++ + + LAAV+ P+ G TG ++++F+ T+ ++ +S Sbjct: 423 EGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSV 482 Query: 476 VVALTLSPVMSSMLLSSRQGEGRLAKR-----IEHSMEALTAIYQRILAHTLAARGAVLL 530 +VAL L+P + + LL LA + YQ I+ H L + Sbjct: 483 LVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRYMA 542 Query: 531 VGAVVLAAIVVLFAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLF--ESI 588 AV+LA +V F P EDQG + + + P A T +Q+E+ F + Sbjct: 543 AYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVDQK 602 Query: 589 PEFDSSFMNIG-DYAG-GQNMMIGGAILKDWSERKR---SATDIQSQIQAAGGAIDGETL 643 F G +AG GQNM LK W ERK S TD+ ++ AA I + Sbjct: 603 EAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDARV 662 Query: 644 TAVQLPPLP--GSSGGLPVQMVLRSPDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDS 701 A P + G++ G + + + L + ++ + + + D+ Sbjct: 663 FAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLEDT 722 Query: 702 PQAHITIDNAKASQMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPE 761 P+ +++D KA +G++M I DT+A G +YVN F R V+ Q RM P Sbjct: 723 PEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRMLPS 782 Query: 762 DIGRFYVKASSGAMVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPG-VSMGEAVAF 820 D+ R+YV+ S+G MVP S + +L ++N + S + + PG S GEA+A Sbjct: 783 DVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAMAI 842 Query: 821 LQS--QPLPPGTSVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILV 878 +++ +PPG +W S Q + + + +++++FL LAA +ES P +++ Sbjct: 843 VEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSVIL 902 Query: 879 TVPLAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDA 938 VPL V GAL+ L + ++Y Q+GL+T IGL K+ IL+V FA + H S ++A Sbjct: 903 VVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGK-SLVEA 961 Query: 939 IEKAAAVRMRPVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLP 998 +A +R+RP+LMT+ A + G++P++ +GAG+ ++ ++G V+ GM+ GT +F +P Sbjct: 962 TMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFVP 1021 Query: 999 TIYSFI 1004 + I Sbjct: 1022 LFFVII 1027 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust. Identities = 325/1032 (31%), Positives = 534/1032 (51%), Gaps = 30/1032 (2%) Query: 7 FIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQGFVTTP 66 FI RPI A V++++I+L G ++ L + QYP + + I GA+ ++ VT Sbjct: 5 FIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQV 64 Query: 67 ISQSIATASGIEYLSSTTKQGRS-EIKARLVLNANADRTMTEILAKVQQVKYQLPAGVTD 125 I Q + ++Y+S+++ S + N D ++ K+QQV +LP V + Sbjct: 65 IEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQN 124 Query: 126 PVISKSTEGGTAVQYIAFYSNTLSIPQVT--DFASRVAQPLLTSIPGVASADVFGGQALA 183 ++ + + ++ S+ I + DF S ++ + GV FG A Sbjct: 125 NGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGTN-YA 183 Query: 184 MRIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKS------SLTVTNISAATDLRGV 237 MRIWIDP +L + L +I++AL+A N + + G++ + I+A + L Sbjct: 184 MRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLTTP 243 Query: 238 DDFRQMVVKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPLEIV 297 D+FR ++VKSS G +V+LSDVA +E+GG++Y S +G P+ +A+Q N L Sbjct: 244 DEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANALATA 303 Query: 298 KRANALLPKIRAMAPPGLTVAPN--YDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLGT 355 L ++ P + + N YD FV S+EEV TL+EAI +V+++++LFL Sbjct: 304 DAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLFLQN 363 Query: 356 FRAVIIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHI- 414 RA IP +T+P+ L+GT ++ G+SIN LT+ MVLAIGL+VDDAIVVVEN+ R + Sbjct: 364 IRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERLMS 423 Query: 415 EEGLSPVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVS 474 EE LSP A +EI G ++ + + L+AV+ P+ GG TG ++++F+ T+ ++ +S Sbjct: 424 EEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALS 483 Query: 475 GVVALTLSPVMSSMLLSSRQG----EGRLAKRIEHSMEALTAIYQRILAHTLAARGAVLL 530 +VALTL+P + + LL G +GR S + YQ +A L LL Sbjct: 484 VMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKRGLL 543 Query: 531 VGAVVLAAIVVLFAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLFESIPE 590 + A++ A+ VLF P EDQG ++ + P A TA + +++ F + PE Sbjct: 544 MYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMNKPE 603 Query: 591 FDSSFMNI-GDYAGG--QNMMIGGAILKDWSERK---RSATDIQSQIQAAGGAIDGETLT 644 S + I G GG QN LKDW +R +SA+++ + A I G + Sbjct: 604 SVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGARVF 663 Query: 645 AVQLPPLP--GSSGGLPVQMVLRSPDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSP 702 + P + G S G +++ L + ++ A ++ L + D+P Sbjct: 664 LMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLDDTP 723 Query: 703 QAHITIDNAKASQMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPED 762 Q + ID+ KA + ++ I TLA +G YVN F + R V Q + RM +D Sbjct: 724 QLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQADD 783 Query: 763 IGRFYVKASSGAMVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPGVSMGEAVAFLQ 822 + R+YV+ ++ MVP + + + + L ++N ++S + PA GVS G A+A ++ Sbjct: 784 LNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEVE 843 Query: 823 S--QPLPPGTSVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTV 880 LP G +W S Q GN+ + + +++ +FL LAA +ES P +++ V Sbjct: 844 KLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAV 903 Query: 881 PLAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDAIE 940 PL + G ++ + + ++Y Q+GL+T +GL +K+ IL+V FA + H S +A Sbjct: 904 PLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQL-HESGKSLWEATL 962 Query: 941 KAAAVRMRPVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLPTI 1000 +A +R+RP+LMT+ A + G++PL A+GAGSASR +IG V+ GM+ T +F +P Sbjct: 963 EAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLF 1022 Query: 1001 YSFIAK--DHRA 1010 Y I D RA Sbjct: 1023 YYLIGAWLDRRA 1034 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 472 bits (1215), Expect = e-134, Method: Compositional matrix adjust. Identities = 325/1035 (31%), Positives = 536/1035 (51%), Gaps = 29/1035 (2%) Query: 6 IFIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQGFVTT 65 FI RPI A VV+L I+L G A+ LP+ +YP + T++I+ PGAT M V + Sbjct: 4 FFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVIS 63 Query: 66 PISQSIATASGIEYL-SSTTKQGRSEIKARLVLNANADRTMTEILAKVQQVKYQLPAGVT 124 I + ++ + Y SS G ++I + + ++ K++ ++ +LP V Sbjct: 64 LIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTVR 123 Query: 125 DPVISKSTEGGTAVQYIAFYSNTLSIPQV--TDFASRVAQPLLTSIPGVASADVFGGQAL 182 ++ + + + ++ S +V D+ +R L + GV +FG + Sbjct: 124 QNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGAEQ- 182 Query: 183 AMRIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKSSLTVTN------ISAATDLRG 236 AMRIW+DP +L A+GL+ +IS A+ N Q APG+L + V ++ L+ Sbjct: 183 AMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQS 242 Query: 237 VDDFRQMVVKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPLEI 296 F +V+K+ G V L DVA +E+G Q+Y + +G PA A+Q +P N + Sbjct: 243 PAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAVRT 302 Query: 297 VKRANALLPKIRAMAPPGLTVAPNYDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLGTF 356 A + ++R P G+ + Y+ A FV SI++V TL+EA+ +V +V++LFL Sbjct: 303 AAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQNV 362 Query: 357 RAVIIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHI-E 415 R +IP + P++L+GT A+M G+S+N+LT+ MVLAIG++VDDAIVVVEN+ R + Sbjct: 363 RYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMAH 422 Query: 416 EGLSPVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVSG 475 EGL P A + EI G +I +T+ L AV+ P+ + GG G ++++F+ +A S++ S Sbjct: 423 EGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSA 482 Query: 476 VVALTLSPVMSSMLLSSRQGEGRLAKR-----IEHSMEALTAIYQRILAHTLAARGAVLL 530 +AL+L+P + + LL G KR + LTA Y+ L +A ++L Sbjct: 483 FLALSLTPALCATLLRPVPA-GHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMML 541 Query: 531 VGAVVLAAIVVLFAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLFESIPE 590 V A + +VV P EDQG + + P A TAR Q E+ + + Sbjct: 542 VYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGRED 601 Query: 591 FDS--SFMNIGDYAGGQNMMIGGAILKDWSERKRSAT--DIQSQIQAAGGAIDGETLTAV 646 + S + G G N + LKDW ERK S + + + A +DG ++ Sbjct: 602 IGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGVDGMVMSL- 660 Query: 647 QLPPLP---GSSGGLPVQMVLRSPDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSPQ 703 LPP G+S G +++ R+ + L ++ A S +D Sbjct: 661 -LPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPAGAS 719 Query: 704 AHITIDNAKASQMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPEDI 763 + ID KA+ +G+S SI+DTL+ +G YVN F R VI Q + S RM ED+ Sbjct: 720 VQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDV 779 Query: 764 GRFYVKASSGAMVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPGVSMGEAVAFLQ- 822 + YV+ SG MVPL+ +++ R QL ++ + + APGV+ GEA+A ++ Sbjct: 780 MKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMER 839 Query: 823 -SQPLPPGTSVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTVP 881 +Q LPPG +V W S Q + + +++V+FLVLAA +ES PL +++ VP Sbjct: 840 LAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVVP 899 Query: 882 LAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDAIEK 941 L + GA+ + L +++ ++G++T+IGL +K+ IL+V FA ++ E + ++A K Sbjct: 900 LGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLR-SEGMGLVEAAIK 958 Query: 942 AAAVRMRPVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLPTIY 1001 A+ +R+RP+LMT+ A G+VPL+ A+GA + ++ +IG V GM+ T + +P + Sbjct: 959 ASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFF 1018 Query: 1002 SFIAKDHRALAQSAR 1016 + + LA+ R Sbjct: 1019 VLVLGCAQRLARKGR 1033 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust. Identities = 334/1011 (33%), Positives = 526/1011 (52%), Gaps = 22/1011 (2%) Query: 7 FIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQGFVTTP 66 FI RP+ ++ L ILL+G A LLP+ P ++ TI + T+ PGA+ DVM VT P Sbjct: 7 FILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSVTAP 66 Query: 67 ISQSIATASGIEYLSSTTKQGRSEIKARLVLNANADRTMTEILAKVQQVKYQLPAGV-TD 125 + + G++ +SST+ G S I + L+ + D E+ A + LP+ + Sbjct: 67 LERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPSDLPMP 126 Query: 126 PVISKSTEGGTAVQYIAFYSNTLSIPQVTDF-ASRVAQPLLTSIPGVASADVFGGQALAM 184 PV SK T + +A SNT+ +P+V D +R+AQ + + + GV + GGQ A+ Sbjct: 127 PVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKI-SQLSGVGLVSLSGGQRPAV 185 Query: 185 RIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKSSLTVTNISAATDLRGVDDFRQMV 244 R+ ++P +AA GL+ ++ A+ NV A G + I A LR D++R ++ Sbjct: 186 RMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYRNLI 245 Query: 245 VKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPLEIVKRANALL 304 + + G +R+SDVA + G +N ++A+ PA+ V +Q P N + +V +L Sbjct: 246 I-AYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSIKKIL 304 Query: 305 PKIRAMAPPGLTVAPNYDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLGTFRAVIIPVV 364 P+++A P + V D + AS+++V+ L+ ++A+V++VIF+FL A IIP V Sbjct: 305 PQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATIIPSV 364 Query: 365 TIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGLSPVRAA 424 +PLSLVGT A+M GFSIN LTL+A+ +A G VVDDAIV++ENI R+IEEG+ P++AA Sbjct: 365 AVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKPMQAA 424 Query: 425 LLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVSGVVALTLSPV 484 L GA +I +I++T +L AV P+ MG + G LF EFA TLA S+++S VV+LTL+P+ Sbjct: 425 LKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLTLTPM 484 Query: 485 MSSMLLSSR--QGEGRLAKRIEHSMEALTAIYQRILAHTLAARGAVLLVGAVVLAAIVVL 542 M + LL + + +G + + + + A Y +L LA + LLV A L V+L Sbjct: 485 MCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVAAATLGLTVLL 544 Query: 543 FAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLFESIPEFDS--SFMNIGD 600 + + P +D G I +++A Q QQ+ K+ P +S SF+ + Sbjct: 545 YVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDPAVESLTSFIGVDG 604 Query: 601 YAGGQN---MMIGGAILKDWSERKRSATDIQSQIQAAGGA-IDGETL--TAVQLPPLPGS 654 N M+I LK R+ SATD+ ++Q A + G TL VQ + S Sbjct: 605 TNATLNSGRMLIN---LKPHDVREVSATDVIRRLQGKLAAEVPGITLYMQPVQDLTIEDS 661 Query: 655 SGGLPVQMVLRSPDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSPQAHITIDNAKAS 714 Q L D + + I S L A N L QA+I ID AS Sbjct: 662 VSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATN-LQDQGLQAYIEIDRNAAS 720 Query: 715 QMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPEDIGRFYVKASSGA 774 ++G++ +I + L G+ ++ Y V+ +V+ + P + Y+ S G Sbjct: 721 RLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALDSIYLVTSGGG 780 Query: 775 MVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPGVSMGEAVAFLQSQP----LPPGT 830 VPLS++ V R + Q + T+ A G S+GEAV +++ +P T Sbjct: 781 KVPLSSIATVTERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEIGMPAST 840 Query: 831 SVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTVPLAVCGALVP 890 ++ + F + L A+V +++VL +ES P+ IL T+P A GAL+ Sbjct: 841 VTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLS 900 Query: 891 LWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDAIEKAAAVRMRPV 950 L + L I IG++ LIG++ K+ I+M+ FA + HE S +AI +A +R RP+ Sbjct: 901 LMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPI 960 Query: 951 LMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLPTIY 1001 LMTT A + G +PL+ G GS R +GI +V G+++ TLF P IY Sbjct: 961 LMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIY 1011 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,819,608 Number of extensions: 110268 Number of successful extensions: 591 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 494 Number of HSP's successfully gapped: 16 Length of query: 1030 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 935 Effective length of database: 1,170,045 Effective search space: 1093992075 Effective search space used: 1093992075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)