BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4323.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase [Herba...    96   5e-21
gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase [Herba...    64   2e-11

>gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 9/306 (2%)

Query: 15  FLTDDDVSQLHSWKDAIEALRAAYAAPVREQMVPPRSMARGDGIWLRTLSAISPSGGHLG 74
           FL++  +S+L + +DAI A+R A+A             +  +G+ L  + A+ P+ G  G
Sbjct: 3   FLSNQQISELLTTEDAIAAMREAFAGAAEGAHQGRVRTSASNGVMLSMMGAVIPAAGIAG 62

Query: 75  SKLISASPRAGCASYLISLFDEQTMALSALIDGNQITAIRTAATAAIAVDALAPQRPLRV 134
           +K+ +     G   ++I LF  +T A    ++G+ +T +RTAA  A+A DALA      +
Sbjct: 63  AKVYTTIK--GQFRFVIQLFSTETGAPLCTMEGDAMTGLRTAAATAVACDALARPDAGVL 120

Query: 135 AMIGAGFEARSQLNALNAARSLHSVSVFSPTPASRERFAADFRDRLGIDISAVASAQAAV 194
           A+IG G +ARS + AL   R    V +   +   ++  A +    LG+    V+  +AA 
Sbjct: 121 AVIGTGVQARSHIPALLQVRPFKEVLIAGRS--GQQALAEEVTRTLGVPARMVSIDEAA- 177

Query: 195 AGADVVICAARSRDESPVLLGQWLEPGMTVISIGSTLPEQREVDVDVIARAGLIVADMVE 254
           A ADV++   RS   +P+  G+ L PG  V ++G++    RE+D   I RA  +  +   
Sbjct: 178 AQADVLVTVTRS--ATPLFDGELLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKP 235

Query: 255 EVAHDTGDMIAANRAGILFSEKLHSLAELIGGRL-APRSSGQIALYKSVGSALQDVVTAE 313
           +   + GD++     G+    ++  LA+ + G +   R    I +YK +G  L+DV  A 
Sbjct: 236 QAQQEAGDLVQCA-PGVFDWAQVMELAQAVDGSMPYQRRPDDIVIYKGIGIGLEDVALAG 294

Query: 314 MLLRRA 319
           +  R+A
Sbjct: 295 LAYRKA 300


>gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 18/211 (8%)

Query: 111 TAIRTAATAAIAVDALAPQRPLRVAMIGAGFEARSQLNALNAARSLHSVSVFSPTPASRE 170
           TA+RTAAT+ +A   +A      +A+IG G ++  Q+ A +    +  V ++   PA+  
Sbjct: 109 TALRTAATSVLAARQMARSDSRVMAVIGNGAQSEFQILAFHHQMGIEVVRLYDTDPAATA 168

Query: 171 RFAADFRDRLGIDISAVASAQAAVAGADVVICAARSRDESPVLLGQWLEPGMTVISIGST 230
           R   + R   G+ +   ASA  AV GAD+V      +  + ++    LE GM + ++G  
Sbjct: 169 RLMRNLRACSGLQLIPCASAAEAVRGADIVTTLTADKRRACIISPAMLEAGMHLNAVGGD 228

Query: 231 LPEQREVDVDVIARAGLIV-----ADMVEEVAHDTGDMIAANRAGILFSEKLHSLAELIG 285
            P + E+  DV+  A ++V     + +  EV     D              +  L +++ 
Sbjct: 229 CPGKTELHADVLKAARVVVEFAPQSRIEGEVQQMPADF------------PVTELWQVLA 276

Query: 286 GRLAPRSS-GQIALYKSVGSALQDVVTAEML 315
           G    RSS  ++ ++ SVG AL+D      L
Sbjct: 277 GHAPGRSSAAEVTVFDSVGFALEDFAALRYL 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 975,730
Number of extensions: 37948
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)