BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4314.p (296 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003... 145 3e-36 gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway... 125 3e-30 gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway... 95 6e-21 >gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003 [Herbaspirillum seropedicae SmR1] Length = 305 Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 149/288 (51%), Gaps = 6/288 (2%) Query: 11 LLAASLSSLAQATEGGGSTYASGGDNFLLGAVPP-PGLYVLQFANFYSSTRSIDNNGNAR 69 LL + A A EGG S + +G + + A+PP PGL+ ++ N+ SS DNNGN Sbjct: 16 LLTMAAGPAAYAFEGGVSPFLTGSTSEYIAALPPIPGLFAVEQFNYSSSNGLYDNNGNKL 75 Query: 70 PIPGFSVHGNVLATRIVWSTPYQLLGGNLVMHTILPIANLSVEAGGSSQTKTGIADVTFG 129 PIP F TR++ S Q LG + +LP+ +L E G S+T G+++VT Sbjct: 76 PIP-FKSSAYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTEVAGHSETHNGLSNVTAT 134 Query: 130 PAIAN-HYSEHLHSVYGFDLVAPTGAYNKNDLANIGRNYWSLQPLFAMSYIDKNGFNGDF 188 P + + H + +GFD+ TG+Y+ ++ Y S QP+ A+ + + +G + Sbjct: 135 PVLLRWDVAAHTNVTFGFDISLETGSYSPTR-PSVAVGYTSWQPVLAVRHNNPDGLDLGI 193 Query: 189 KATLNLNQTNSATQYRSGTEFNLDYAAGYSVARDWVAGVSGYWYRQVKDDSQNGVTVANA 248 L +N NS+T YRSGT + D+ G++V + W GV+G + Q DD QNG + Sbjct: 194 SNRLLINDRNSSTNYRSGTAYVADFIGGWNVGK-WKFGVTGSYLNQFTDDRQNGADITGN 252 Query: 249 RGRAFAIGPSVKYDNGRGFILTAKIQREMAVRNRTEGTAIDFRASIPF 296 R R+ ++GP+V Y+ G F + QR + N + AI ++P Sbjct: 253 RARSLSLGPTVAYNAGP-FSINMNYQRGLYAANTAKSDAIWINFAMPL 299 >gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 125 bits (315), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 14/299 (4%) Query: 9 MMLLAASLSSLAQATEGGGSTYASGGDNFLLGAVPP--PGLYVLQFANFYSSTRSIDNNG 66 ++ L A S AQA E G + G +F G +PP P V A++YS++ D G Sbjct: 21 VVCLGAFFSLPAQAVEQGATITPIGITDFGAGMLPPSSPFGTVGVRASYYSASTLKDGAG 80 Query: 67 NARPIPGFSVHGNVLATRIVWSTPYQLLGGNLVMHTILPIANLS------VEAGGSSQT- 119 + P F + LA + T ++LG + +LP ++S AG S + Sbjct: 81 KSIP-NDFHIDVKTLALAYFYMTDVEVLGARFGVGGVLPFIDISGGLKVGTPAGPLSVSG 139 Query: 120 -KTGIADVTFGPAI-ANHYSEHLHSVYGFDLVAPTGAYNKNDLANIGRNYWSLQPLFAMS 177 +G+ D+ P I A + G + APTGAY+ + N G N+W+ P + Sbjct: 140 RDSGLGDMQVLPFILAWQLPPSVFVNAGLMIQAPTGAYSTSKAFNAGVNHWTYSPFVGAT 199 Query: 178 YIDKNGFNGDFKATLNLNQTNSATQYRSGTEFNLDYAAGYSVARDWVAGVSGYWYRQVKD 237 YI +G + +LN+N N AT+YRSG E+ ++A G + + W AG++GY YRQ+ D Sbjct: 200 YITSSGLELSTQVSLNVNTVNPATRYRSGVEYRQEFAIGQHI-QSWTAGLAGYVYRQLSD 258 Query: 238 DSQNGVTVANARGRAFAIGPSVKYDNGRGFILTAKIQREMAVRNRTEGTAIDFRASIPF 296 DS G N RGR +A+GP+V + ++T +E RNR EG + R ++ F Sbjct: 259 DSGPGSGDGN-RGRVYALGPAVSFAQPGLPLVTLHGYQEFGARNRAEGYNLALRLAMTF 316 >gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 30/285 (10%) Query: 33 GGDNFLLGAVPP--PGLYVLQFANFYSSTRSIDNNGNARPIPG---FSVHGNVLATRIVW 87 GG +F GA P PG Y +++ + +T+ +DNNGN P SV V T+ ++ Sbjct: 31 GGTSFFDGAPLPGGPGFYFVEYLTYSKATKLVDNNGNRLGFPATQDISVFAPV--TQFIY 88 Query: 88 STPYQLLGGN-LVMHTILP-IANLSVEAGGSS---QTKTGIADVTFGPAIANHYSEHLHS 142 P G L ++P +A+ V+ G ++ + TGI D++ G ++ Y + + Sbjct: 89 VPPGAKFGNKQLGFQVLVPWVASAKVDDGANNAVLRGNTGIGDISAGVSV--QYDPIMGA 146 Query: 143 V-------YGFDLVAPTGAYNKNDLANIGRNYWSLQPLFAMSYIDKNGFNGDFKATLNLN 195 + + PTGAY++N N G N W+ P +A + + ++ N Sbjct: 147 QGPLYAQRFELQFILPTGAYDRNATVNPGSNTWAFDPYWAGTLWASQNLSFSWRLHYLWN 206 Query: 196 QTNSA---------TQYRSGTEFNLDYAAGYSVARDWVAGVSGYWYRQVKDDSQNGVTVA 246 N+A + ++G + ++AA Y + W G +GYW +QV D NG V+ Sbjct: 207 ARNNAPSAAFGNNVSSTQAGQAAHANFAAEYVLNPTWTVGAAGYWLQQVTDTKVNGADVS 266 Query: 247 NARGRAFAIGPSVKYDNGRGFILTAKIQREMAVRNRTEGTAIDFR 291 R R +GP+ +L + +E AVRNR E + R Sbjct: 267 GRRERVVGLGPAAMMRLSERDLLFFNVYQEFAVRNRAENSKFQIR 311 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 968,142 Number of extensions: 41316 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 3 Length of query: 296 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 211 Effective length of database: 1,217,395 Effective search space: 256870345 Effective search space used: 256870345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)