BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4311.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 175 4e-45 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 166 1e-42 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 165 3e-42 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 164 5e-42 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 164 5e-42 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 175 bits (443), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 147/233 (63%), Gaps = 3/233 (1%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L V GL+ YG Q LFGID+ VR GE V L+G NG GK++ LR ++G R + Sbjct: 4 LLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGVVRF 63 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQV--AARNGRAGVWTVERVLREL 118 G+AI S A RG+A+VPEGR++F +LSV ENL A RNGR WT+E++ ++ Sbjct: 64 RGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIYQQF 123 Query: 119 PVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIK 178 P L + +H LSGG+QQ++A+ RAL+TNP L+ DE + GL+PL ++++ ++ ++ Sbjct: 124 PRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLLILDEATEGLAPLVREEIWSCLKALR 183 Query: 179 NEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEAD-QDQVTHAYFGV 230 G++I+++++ + R + +D++ ++KG++ G S++ Q ++ Y V Sbjct: 184 EYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQGDSAQLSVQTELWDQYLSV 236 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 137/226 (60%), Gaps = 4/226 (1%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L+V GL +Y LFG+DL +R GE VAL+G NGAGKS+ L+A++G + + QI L Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAARNGRAGV--WTVERVLREL 118 G+ IG + + G+ VPE R++F LSVLENL+ + R G WT + + Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 119 PVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIK 178 P L + R +SGG+QQ++ ++R L+ NP LL DE S G++P+ V + A+I+++K Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 179 NEGISILLVEQNLHRALAESDRYYCIQKGRISLAGI--SSEADQDQ 222 GI+ILL EQNLH A DR Y + +GRI AG S +A Q Q Sbjct: 185 RSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQ 230 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 165 bits (417), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 141/232 (60%), Gaps = 3/232 (1%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L+V + YYG L G+ L V GE V L+G NGAGK++ L+++VG + + ++ Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAARNGRAGVWTVERVLRELPV 120 +G+ I G ARG+ LVPE R +F L+V ENL +AAR A W +E + P Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESA--WGLEEIYAIFPR 119 Query: 121 LDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIKNE 180 L + + LSGG+QQ++A++RAL+T+P L+ DE GL+P+ V+++ A IRQIK Sbjct: 120 LKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKAT 179 Query: 181 GISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQDQ-VTHAYFGVT 231 G+SI+LVEQNL +DR+Y +++GRI G ++E D+ V Y GV Sbjct: 180 GMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGVN 231 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 164 bits (416), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 144/233 (61%), Gaps = 5/233 (2%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 ML+ + + +YG +AL G+ L V GE V LIGANGAGK++LL + G R ++ Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAA--RNGRAGVWTVERVLREL 118 +G+ I + RG+A+ PEGR++FPSL+VLENL++ A + A +E V Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 121 Query: 119 PVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIK 178 P L + + A ++SGG+QQ++A+ RAL++ P LL DE +LGL+PL + ++ +IR I+ Sbjct: 122 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 181 Query: 179 NEGISILLVEQNLHRALAESDRYYCIQKGRISLA--GISSEADQDQVTHAYFG 229 G+++ LVEQN ++AL +DR Y ++ G + ++ G + A+ D V AY G Sbjct: 182 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSD-VRKAYLG 233 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 164 bits (416), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 143/235 (60%), Gaps = 6/235 (2%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L+V LS YG QA+ GIDL V GE V LIGANGAGK++ L+A+ G++ R + H+ Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 61 D--GKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAARNGRAGVWTVERVLREL 118 + G+ + G+ + +A+VPEGR +F +S+ ENL + A + + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 119 PVLDQLKHRPAT---SLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIR 175 V +LK R A +LSGG+QQ++A++RAL+++P LL DE S+GLSP+ V ++ +IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 176 QIKNEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEA-DQDQVTHAYFG 229 + +GI+ILLVEQN AL + R Y ++ G I++ G + + D +V AY G Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 748,033 Number of extensions: 31798 Number of successful extensions: 512 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 141 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)