BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4310.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 148 4e-37 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 145 4e-36 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 143 1e-35 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 140 7e-35 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 140 7e-35 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 148 bits (373), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 143/253 (56%), Gaps = 14/253 (5%) Query: 1 MLLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVL 60 MLLQL+D+ K++ VL G ++ +GE+ G+IGPNGAGK+T+F I+G R +G + Sbjct: 1 MLLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 Query: 61 LDGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVA---------ATFGAGLHG- 110 + DI + + + GI RTFQ R F +T+ EN +V A+ L G Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 111 ----RAAATQAVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGG 166 + A +A++ ++ L A+ A L+ ++++LE ARA+AT+P+LLLLDE G Sbjct: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 167 LTDGEVAELLLLVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNS 226 + E EL+ + +I + G + IEH + ++ + R+ VL+ G+I+ EG P + N+ Sbjct: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 227 RLVRETYLGSDPA 239 + V E YLG + A Sbjct: 241 QEVIEAYLGKEEA 253 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 145 bits (365), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 142/251 (56%), Gaps = 15/251 (5%) Query: 2 LLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLL 61 +L++S++ + + + G +L++ E E+ +IGPNGAGK+T+F ISG +R +G+++L Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 62 DGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVA------ATFGAGL------- 108 DGA I + Q G+ RTFQ R F +TV EN LVA +GL Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 109 -HGRAAATQAVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGL 167 + A +A ++Q GL A ANR A L+ ++R+E+AR + T+PRLLLLDE A GL Sbjct: 128 KSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 Query: 168 TDGEVAELLLLVQSINRT-GTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNS 226 E EL L+ + R G AVL IEH + ++ + R++V+ G+ + G P+ V + Sbjct: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 Query: 227 RLVRETYLGSD 237 V + YLG + Sbjct: 248 ERVIKAYLGEE 258 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 10/244 (4%) Query: 2 LLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLL 61 LLQ+ + KS+ L + +L G+++ +IGPNGAGKST F I+G+ R D G+VLL Sbjct: 3 LLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLL 62 Query: 62 DGADITSFSAEQRCW-AGIGRTFQIPRPFLGITVYEN---ALVAATFGAGLHGRAAAT-- 115 DG IT A +R W G+GRTFQ+ F +TV ++ AL++ R A + Sbjct: 63 DGQSITGLDA-RRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSLF 121 Query: 116 --QAVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGEVA 173 QA++ ++Q G+AA A R A L KR+ELA A++ PRLLL+DE G+ E Sbjct: 122 RQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQERQ 181 Query: 174 ELLLLVQS-INRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSRLVRET 232 L+ L + +N G AVL+ EH + + A R++VL+ G+++ +G P V VRE Sbjct: 182 ALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVREL 241 Query: 233 YLGS 236 Y GS Sbjct: 242 YFGS 245 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 140 bits (354), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 14/249 (5%) Query: 2 LLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLL 61 LL++ DV K + L+G +++ G++ G+IGPNGAGK+T F I+G ++ D G L Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 62 DGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAA-------TFGAGLHGRAAA 114 DG + + + AGI RTFQ R F +TV EN +V FGA +AA Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAR 124 Query: 115 TQ--AVDAINQ-----CGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGL 167 + A+ +Q G+ +A R A L+ ++RLE+ARA+AT P+LL LDE A G+ Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 168 TDGEVAELLLLVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSR 227 E L L+ I G +L IEH V ++ + +R+ VL G+ + EG P V + Sbjct: 185 NATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 Query: 228 LVRETYLGS 236 V E YLG+ Sbjct: 245 AVIEAYLGA 253 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 140 bits (354), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 14/249 (5%) Query: 2 LLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLL 61 LL++ DV K + L+G +++ G++ G+IGPNGAGK+T F I+G ++ D G L Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 62 DGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAA-------TFGAGLHGRAAA 114 DG + + + AGI RTFQ R F +TV EN +V FGA +AA Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 Query: 115 TQ--AVDAINQ-----CGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGL 167 + A+ +Q G+ +A R A L+ ++RLE+ARA+AT P+LL LDE A G+ Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 168 TDGEVAELLLLVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSR 227 E L L+ I G +L IEH V ++ + +R+ VL G+ + EG P V + Sbjct: 185 NATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 Query: 228 LVRETYLGS 236 V E YLG+ Sbjct: 245 AVIEAYLGA 253 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 754,382 Number of extensions: 30284 Number of successful extensions: 449 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 127 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)