BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4297.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313712|ref|YP_003777804.1| hypothetical protein Hsero_4430...   514   e-147

>gi|300313712|ref|YP_003777804.1| hypothetical protein Hsero_4430
           [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  514 bits (1325), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/323 (75%), Positives = 273/323 (84%)

Query: 1   MTTYVDEHQPEPHFDGLLGNRKVDARVRKCEIHEEGLPPVSAHFLYPVFRAGKPTVPELV 60
           MT +VDEHQP  HFD LLG R VDAR++ C +HEEGLP VSAHFLYP F+ GKP+V ELV
Sbjct: 1   MTVHVDEHQPGRHFDNLLGRRNVDARIKNCSVHEEGLPLVSAHFLYPAFKGGKPSVAELV 60

Query: 61  KMLVREITGFCATKRQRREAKEKDFKSKYDSREWEDLADWAKGLFIKADASSGRSGEAGE 120
           KML+REITGFCATK QRR AKEKD  S YD+RE EDLADWAK LFIK   SS RSGE GE
Sbjct: 61  KMLMREITGFCATKLQRRRAKEKDRLSTYDARETEDLADWAKALFIKTKESSSRSGEGGE 120

Query: 121 LLLYVFIEHYLKAPLVLSKMRLKTSPAMPVHGADGVHAMWDVDGKRLTMFFGESKLHERF 180
           LLLYVFIEHYLKAPLVLSKMRLKTSP+MP+HGADGVHAMWD  G+RLTMFFGESK+HE F
Sbjct: 121 LLLYVFIEHYLKAPLVLSKMRLKTSPSMPIHGADGVHAMWDEHGERLTMFFGESKMHESF 180

Query: 181 SSAMSDAAESIGWLANNVNGRMDNELQLTTGHIDLDGFPAELQEYLLRYLHPYATEEGNR 240
           +SAMSDAAESI WLA N +GRMDNELQLT+G+IDLDGFP ELQEYLLR+LHPY T+EGNR
Sbjct: 181 ASAMSDAAESISWLAKNADGRMDNELQLTSGNIDLDGFPEELQEYLLRFLHPYDTDEGNR 240

Query: 241 RNDRFAILIGYDYAAYEKLIAIAPDAAEERFLESYRENLRQKLEAAQSHLQRHNVSLASV 300
           R+DRFAILIGYDYAAY KL     + AEE F E YR++L QKL  AQSHL+RH +SLA+V
Sbjct: 241 RSDRFAILIGYDYAAYNKLAKKGVEEAEEYFKELYRKSLSQKLRTAQSHLERHEISLAAV 300

Query: 301 DIFFLPLPGVKAFRDAFNEELRG 323
           D+FFLPLP V++FRD FN EL G
Sbjct: 301 DLFFLPLPDVQSFRDEFNRELHG 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,048,814
Number of extensions: 43497
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)