BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4296.p
         (856 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313711|ref|YP_003777803.1| DNA helicase [Herbaspirillum se...  1223   0.0  

>gi|300313711|ref|YP_003777803.1| DNA helicase [Herbaspirillum
           seropedicae SmR1]
          Length = 857

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/851 (69%), Positives = 706/851 (82%)

Query: 3   NFNQQLAYRVANHQQFQDAYATLQKQSLASLSGKIPELEIAEKNRLLRSALILAQSKKQE 62
           NFN QLA RVA+ Q+FQ AY TLQK+SLASLSG+ P ++I E+N+LLRSALILAQS  ++
Sbjct: 3   NFNLQLAQRVASSQKFQIAYETLQKESLASLSGRTPSIDIGERNKLLRSALILAQSGSKQ 62

Query: 63  YATLSQDIVYALATLQLENSERLVCQHILAILGNFPASDFLRGDRSKFANLPWQLQLAEQ 122
           Y+TLSQDIVYALATL LE S+R VC+HILA+LGNFPASDFL+G+      LPW L+L+E+
Sbjct: 63  YSTLSQDIVYALATLPLETSQRAVCEHILAMLGNFPASDFLKGNNLAHGRLPWNLKLSEE 122

Query: 123 VRRDENFVKILGEDVLLTDFQVDVWEELAERQYLSIAAPTSAGKSFLIQLYLKKILSNTD 182
           VRRDEN+V +LG+++LLTDFQ DVW+EL  +Q+LSIAAPTSAGKSFLIQLYLK +L N+D
Sbjct: 123 VRRDENYVSVLGKEILLTDFQADVWDELKTQQFLSIAAPTSAGKSFLIQLYLKSLLGNSD 182

Query: 183 RLVDIAYVVPSRSLIHEIQAALTRAFQGFENAPLISSVPRQNEGLAASQSRIFVFTQERL 242
           RL+DIAYVVP+RSLIHE+ A+L +AF GFEN P+ISS+PR +E LAA+QSRIFVFTQERL
Sbjct: 183 RLLDIAYVVPTRSLIHEVHASLIKAFTGFENPPVISSIPRADERLAATQSRIFVFTQERL 242

Query: 243 RTAMDESDLMLDYLVVDEAQQIADGARGMLLLSCLEEVRKNSPRAQILFITPGSRSGGPI 302
           RTAMDE+DL LD L+VDEAQQIADG+RGMLLLSCLE+V + +P+AQILFITPGSRSG  I
Sbjct: 243 RTAMDEADLALDCLIVDEAQQIADGSRGMLLLSCLEDVNERAPQAQILFITPGSRSGASI 302

Query: 303 GSLLGLGQLPTVETALRPVRQNLIYVRFRSLNQKQYLELTLHRANQEPLALEKADVEGPP 362
           GSL+GLG+LP+VET LRPVRQNLIYV F+S  +KQ+L+LTLHR NQ+PLALE  D+EG P
Sbjct: 303 GSLMGLGELPSVETTLRPVRQNLIYVNFKSAKKKQHLQLTLHRENQKPLALENVDLEGEP 362

Query: 363 VFAAGARFFRTIMTLGDEGQNIVYASTKKTAEKIAIAIANELRERNEIPKNPISLLELSD 422
           V  AGARF   +MTLGDEGQN+VYAS K  AEK+A AIA  L  ++   K   +LLELS+
Sbjct: 363 VSNAGARFLTAVMTLGDEGQNLVYASGKAAAEKMAEAIAAALGGKDNFVKQTEALLELSE 422

Query: 423 FVKRHVHPEYVLAECIKVGVAFHYGSMPTTLTKAIEEYFSKGAIKYLVCTSTLLQGVNLP 482
           FVK+HVHP+Y L + IK GVA+HYGSMPTTLTKAIEEYF+ GA+KYLVCTSTLLQGVNLP
Sbjct: 423 FVKKHVHPQYALVDSIKSGVAYHYGSMPTTLTKAIEEYFANGALKYLVCTSTLLQGVNLP 482

Query: 483 ARNIFISNPYKGNGNPMGTEDFWNLAGRAGRLSKDTHGNVFLVEYQHWDSAPVDEPRQLE 542
           ARNIFI NP KG G PMG +DFWNLAGRAGRLSKDTHGNVFL+EY+ WD  PV+E RQ E
Sbjct: 483 ARNIFIRNPKKGMGKPMGPDDFWNLAGRAGRLSKDTHGNVFLIEYKKWDRQPVEEVRQKE 542

Query: 543 IIPSLSKAFSTARPEMLRFMRNENHESGLRKTNFAESVFTRLFIDAKEGLIERTIERANM 602
           + PSLSKAF+T+  E++ F+R+ENH SG + TNFAESVF RLFIDAKEG++E+TIERA  
Sbjct: 543 VTPSLSKAFTTSHTEVMDFIRDENHVSGAKDTNFAESVFARLFIDAKEGVMEQTIERATR 602

Query: 603 GKISEGAGVLKEVVEGHLNKVLLPPEILKRNASISPLRQQAMFDVLLAEVQKGRTRHLIP 662
           G   E A  + + +  HL+KV+LPPE+LKRN+S+SPLRQQAMFDVLLA V++G T  L+P
Sbjct: 603 GIAMESAVSISDAIREHLDKVMLPPELLKRNSSVSPLRQQAMFDVLLAVVKRGGTAQLVP 662

Query: 663 PHPRHPNTARERMEYVMSLIHQHLQGKETRRQRYFGWFSISWMRGSSLADMIEYQLRKAR 722
            HP      +ER+E +M LIH+HL+GKET +Q YFGWF++SWMRGSSL DMIE+Q++  R
Sbjct: 663 HHPLQSGQVKERLESIMDLIHRHLEGKETNQQYYFGWFALSWMRGSSLRDMIEHQIQYER 722

Query: 723 REAEEKGTRPPEPGEIIVKVLGQVENDLRFHYVRYIGCYIDLLRYAFEKVRPGRSIEIPA 782
           R+AE  G   PEPG+ I+KVL  VEN LRFHYVRYIGCYIDLL++A   V P R +++P 
Sbjct: 723 RKAEVNGDEEPEPGKTIIKVLDDVENKLRFHYVRYIGCYIDLLKHAVGVVSPDRELDVPP 782

Query: 783 IPLFLELGACSKTMISCMELGLSRIAAREVTDLLGKEGLDAVAVKFRLKKMKISNFSLSP 842
           IPLFLELGACS TMI CMELGLSRIAARE+TDLLGK  LDAVA+K RL  +K ++  LSP
Sbjct: 783 IPLFLELGACSGTMIGCMELGLSRIAARELTDLLGKSDLDAVAIKRRLINLKGASLKLSP 842

Query: 843 IIVSEILRLGL 853
           IIVSEI R+GL
Sbjct: 843 IIVSEIKRIGL 853


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,379,778
Number of extensions: 94739
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 1
Length of query: 856
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 763
Effective length of database: 1,179,515
Effective search space: 899969945
Effective search space used: 899969945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)