BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4280.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313368|ref|YP_003777460.1| hypothetical protein Hsero_4082...   128   3e-31

>gi|300313368|ref|YP_003777460.1| hypothetical protein Hsero_4082
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  128 bits (321), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 102/171 (59%), Gaps = 1/171 (0%)

Query: 1   MPTKLHEALAVIFQPMAGRARKIIAVPRGVAEELPFVNSVAIISITARDKSLATLAPFPH 60
           M  ++ +  A I +P     ++++A+ +G AE +P +  VA+ISI   D + A L P+  
Sbjct: 1   MSQRIKDIFAAIHRP-PETGKRVLALSKGDAERIPLLPGVAMISIVDADSAQAVLPPYEF 59

Query: 61  ILRLSFADIDHLNPSASKRSLAKAADAFTPAQASDVLDFVEGLPDSINSVVVHCEGGYSR 120
           +LRLSF+D+D L  + S R+  K  +A T AQ  +V  FV  LP+SI++V+VHC  G SR
Sbjct: 60  LLRLSFSDVDFLAHNLSDRAQKKLGEAMTKAQGLEVNRFVRALPESIHTVIVHCGAGVSR 119

Query: 121 SCAIAKGLNQIYGFEVREGDLSEANPSVVEVMKRAAASRQRGKRANRRRPK 171
           SC +A  LN IYGFEV E  L  AN SV +++   A ++ R K   R + K
Sbjct: 120 SCGVASALNAIYGFEVEEQRLKGANQSVKKLLIEVAKNQSRSKDNRRAKSK 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 522,519
Number of extensions: 19790
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)