BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4279.p (605 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosph... 1178 0.0 gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthas... 106 7e-24 gi|300312583|ref|YP_003776675.1| glutamine phosphoribosylpyropho... 70 5e-13 >gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosphate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 605 Score = 1178 bits (3047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/605 (96%), Positives = 596/605 (98%) Query: 1 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVADLQQQVAQ 60 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVA+LQQQ+AQ Sbjct: 1 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVAELQQQIAQ 60 Query: 61 TGLSGFTGIAHTRWATHGAPATHNAHPHFSRERIALVHNGIIENHDELRAELQAAGYVFE 120 +GLSGFTGIAHTRWATHGAPATHNAHPHFSR+RIALVHNGIIENHDELRAELQA GYVFE Sbjct: 61 SGLSGFTGIAHTRWATHGAPATHNAHPHFSRDRIALVHNGIIENHDELRAELQAVGYVFE 120 Query: 121 SQTDTEVIAHLIDHMYDGDLFHTVQQAVRRLTGAYAIAVFCADEPHRVVAARQGSPLIVG 180 SQTDTEVIAHL+DHMYDGDLF+TVQQAVRRLTGAYAIAVFCADEPHRVVAARQGSPLIVG Sbjct: 121 SQTDTEVIAHLVDHMYDGDLFNTVQQAVRRLTGAYAIAVFCADEPHRVVAARQGSPLIVG 180 Query: 181 VGEGQNFVASDAMALAGTTDQIIYLEEGDVVDLQIQKVWIVDAAGKPAVREVRTVQAYTS 240 VGEGQNFVASDAMALAGTTDQIIYLEEGDVVDLQ+QKVWIVDAAG+PA REVRTVQAYTS Sbjct: 181 VGEGQNFVASDAMALAGTTDQIIYLEEGDVVDLQLQKVWIVDAAGRPAEREVRTVQAYTS 240 Query: 241 AVELGPYQHYMQKEIFEQPRAIADTLEGVVGIMPELFGDKAYKVFKGIDSILILACGTSY 300 AVELGPYQHYMQKEIFEQPRAIADTLEGVVGIMPELFGDKAYKVFK IDSILILACGTSY Sbjct: 241 AVELGPYQHYMQKEIFEQPRAIADTLEGVVGIMPELFGDKAYKVFKEIDSILILACGTSY 300 Query: 301 YAGLTAKYWLESIARIPVNVEIASEYRYRDSVPNPKSLVVTISQSGETADTLAALKHARS 360 YAGLTAKYWLESIA+IPVNVEIASEYRYRDSVPNPKSLVVTISQSGETADTLAALKHARS Sbjct: 301 YAGLTAKYWLESIAKIPVNVEIASEYRYRDSVPNPKSLVVTISQSGETADTLAALKHARS 360 Query: 361 LGMLHTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFTTQLTALFLLTLVLAQSRG 420 LGM HTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFTTQL ALFLLTL LAQ+RG Sbjct: 361 LGMQHTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFTTQLAALFLLTLALAQTRG 420 Query: 421 LLTEEQEAEHLKAMRHLPAALQGVLALEPSIVAWAEAFARRENALFLGRGLHYPIALEGA 480 LLTEEQEAEHLKAMRHLPAALQ VLALEPSIVAWAE+FARRENALFLGRGLHYPIALEGA Sbjct: 421 LLTEEQEAEHLKAMRHLPAALQSVLALEPSIVAWAESFARRENALFLGRGLHYPIALEGA 480 Query: 481 LKLKEITYIHAEAYAAGELKHGPLALVTEQMPVVTIAPNDALVEKLKSNMQEVRARGGQL 540 LKLKEITYIHAEAYAAGELKHGPLALVT+QMPVVTIAPNDALVEKLKSNMQEVRARGGQL Sbjct: 481 LKLKEITYIHAEAYAAGELKHGPLALVTDQMPVVTIAPNDALVEKLKSNMQEVRARGGQL 540 Query: 541 YVFADGDSRITSAEGVHVIRMPEHYGALSPILHVVPLQLLSYHTALARGTDVDKPRNLAK 600 YVFADGDS I+SAEG+HVIRMPEHYG LSPILHVVPLQLLSYHTALARGTDVDKPRNLAK Sbjct: 541 YVFADGDSHISSAEGLHVIRMPEHYGVLSPILHVVPLQLLSYHTALARGTDVDKPRNLAK 600 Query: 601 SVTVE 605 SVTVE Sbjct: 601 SVTVE 605 >gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 139/270 (51%), Gaps = 29/270 (10%) Query: 337 SLVVTISQSGETADTLAALKHARSLGMLHTLTICNVATSAMVRECELAYITRAGVEVGVA 396 +L + +SQSG++ D + +++ + G T+ + N A S + + + AGVE VA Sbjct: 85 ALAIAVSQSGQSPDVVEPIRYFHAQGAT-TVALVNQADSPLASAAQWSLPLHAGVESSVA 143 Query: 397 STKAFTTQLTALFLLTLVLAQSRGLLTEEQEAEHLKAMRHLPAALQGVLALEPSIVAWAE 456 +TK+F L A LLT + +A L A+ LP AL+ A + W++ Sbjct: 144 ATKSFIASLVASALLTA---------HWQDDAALLNALAQLPDALRAACACD-----WSD 189 Query: 457 A---FARRENALFLGRGLHYPIALEGALKLKEITYIHAEAYAAGELKHGPLALVTEQMPV 513 A + + +GRG+ +P+ALE ALK KE I AEA++ E+KHGP+AL+ E P+ Sbjct: 190 AVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPIALIEEGYPL 249 Query: 514 VTIA---PNDALVEKLKSNMQEVRARGGQLYVFADGDSRITSAEGVHVIRMPEHYGALSP 570 + A P+ A + L + E+R RG ++ + A D + + V P+ L P Sbjct: 250 LMFAIRGPSQAGMLALAA---EMRVRGAKVLLAAPEDV-VERDLTLPVAATPD----LDP 301 Query: 571 ILHVVPLQLLSYHTALARGTDVDKPRNLAK 600 I+ + +++ + ARG D D+PR+L K Sbjct: 302 IVAIQAFYVMAAQLSAARGMDADRPRHLNK 331 >gi|300312583|ref|YP_003776675.1| glutamine phosphoribosylpyrophosphate amidotransferase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 31/222 (13%) Query: 1 MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVADLQQQVAQ 60 MCGIVG V+ V +L + L L++RG D+ G+A + ++ V D+ + Sbjct: 1 MCGIVGIVSHSPVNQMLYDALLLLQHRGQDAAGIATNHSNGFSMHKANGLVRDVFRTRNM 60 Query: 61 TGLSGFTGIAHTRWATHGAPAT-HNAHPHFSRER--IALVHNGIIENHDELRAEL-QAAG 116 L G TGI R+ T G+ ++ A P + I L HNG + N ++L+ E+ + Sbjct: 61 RSLPGNTGIGQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLKIEMFKNDR 120 Query: 117 YVFESQTDTEVIAHLIDHM-------YDGD---LFHTVQQAVRRLTGAYAIAVFCAD--- 163 + +DTEV+ +++ H Y D LF V +R+ G+YA+ A Sbjct: 121 RHINTDSDTEVLLNVLAHEIQQATTGYSLDPAALFKAVAMVHKRVRGSYAVVAQIAGYGL 180 Query: 164 ----EPHRVVAARQGSPLIVGVGEGQN----FVASDAMALAG 197 +P+ + P+ +G E +AS+++AL G Sbjct: 181 LGFRDPYGI------RPMCLGFNESDKGVEYMMASESVALEG 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,864,523 Number of extensions: 79633 Number of successful extensions: 277 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 274 Number of HSP's successfully gapped: 3 Length of query: 605 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 514 Effective length of database: 1,188,985 Effective search space: 611138290 Effective search space used: 611138290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)