BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4278.p (162 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313708|ref|YP_003777800.1| AsnC family transcription regul... 272 8e-75 gi|300312760|ref|YP_003776852.1| transcription regulator protein... 125 2e-30 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 91 5e-20 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 85 2e-18 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 84 6e-18 >gi|300313708|ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 272 bits (696), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 137/159 (86%), Positives = 146/159 (91%), Gaps = 1/159 (0%) Query: 4 SIALDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAA 63 + LDDLDRRIL+ALQ DASQTNQELAA+VHASPPTCLRRVKRLVE GVIARQVALLDA Sbjct: 2 TFELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQ 61 Query: 64 QLASTLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYH 123 ++A+ LTA+VEITLDRQGEEEQQ FEALVA E AVQQCYRVSPGPDFVLVVLVRDM +YH Sbjct: 62 KVAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMSSYH 121 Query: 124 ALAHRLFASQRNVRNVRSYFSIHRSKFETAILLDTDEAS 162 ALAHRLFASQRNVRNVRSYFSIHRSKFETAI +D D AS Sbjct: 122 ALAHRLFASQRNVRNVRSYFSIHRSKFETAIPID-DAAS 159 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 125 bits (314), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 94/155 (60%) Query: 7 LDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQLA 66 LD +DR++L LQ D + + LA ++H S PTCLRR++ L EAG+I+ +VA++D L Sbjct: 8 LDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRDLREAGIISAEVAMVDPFALG 67 Query: 67 STLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126 + A +EI+L+ Q ++ Q FE +A EA V QCY VS D+ L V V DM AY+ Sbjct: 68 YGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFV 127 Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETAILLDTDEA 161 R+ + NVR+ +S F + R+KF T I D A Sbjct: 128 RRVISGSGNVRHFQSRFPMKRAKFTTRIAFDEKAA 162 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 90.9 bits (224), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 82/148 (55%) Query: 7 LDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQLA 66 LD D RIL LQ ++S +N ELA++++ SP L RVKRL G+I+R VAL D L Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 67 STLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126 + V++ L+RQG E FE V+ V + Y ++ D++L ++V D+ Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETAI 154 ++N+RS F++ + K++TA+ Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKTAL 150 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 76/145 (52%) Query: 5 IALDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQ 64 ++LD +D+RIL+ALQ D N ELA ++ S C KRL+E G + A+LD + Sbjct: 1 MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEK 60 Query: 65 LASTLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHA 124 L + V + LDR E FE V AAVQ+C ++ D+ + + V+D+ A++ Sbjct: 61 LGLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120 Query: 125 LAHRLFASQRNVRNVRSYFSIHRSK 149 L VR +RS+F ++ K Sbjct: 121 LHANTLLRLPGVRQLRSFFVLNEVK 145 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 84.0 bits (206), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 73/145 (50%) Query: 5 IALDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQ 64 I +D D +L LQ D TN L +VH S RRV+RL EA VI R A+LD A Sbjct: 4 INVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 Query: 65 LASTLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHA 124 + +TA +TLDRQGE + FE V V +C+ V+ D++L ++ D+ A+ Sbjct: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 Query: 125 LAHRLFASQRNVRNVRSYFSIHRSK 149 V NV+S ++ + K Sbjct: 124 FMMTRLLRLPGVTNVKSNITLKKVK 148 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 449,728 Number of extensions: 16207 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 9 Length of query: 162 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 84 Effective length of database: 1,250,540 Effective search space: 105045360 Effective search space used: 105045360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)